Construct: ORF TRCN0000468276

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006373.1_s317c1
Derived from:
ccsbBroadEn_03234
DNA Barcode:
GATCTTACTCCAAACCGTTCTCAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HSD17B14 (51171)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468276
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51171 HSD17B14 hydroxysteroid 17-beta dehy... NM_016246.3 100% 100%
2 human 51171 HSD17B14 hydroxysteroid 17-beta dehy... XM_005258969.4 78.5% 68.2% 541_542ins97;636_637ins77
3 human 51171 HSD17B14 hydroxysteroid 17-beta dehy... XR_243938.3 57.5% 1_275del;552_553ins92;994_1156del
4 human 51171 HSD17B14 hydroxysteroid 17-beta dehy... XM_005258970.3 51.8% 39.1% 277_278ins92;420_421ins298
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
876
ORF length:
810
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tacgggaacg cgctatgccg ggaaggtggt ggtcgtgacc gggggcgggc
121gcggcatcgg agctgggatc gtgcgcgcct tcgtgaacag cggggcccga gtggttatct
181gcgacaagga tgagtctggg ggccgggccc tggagcagga gctccctgga gctgtcttta
241tcctctgtga tgtgactcag gaagatgatg tgaagaccct ggtttctgag accatccgcc
301gatttggccg cctggattgt gttgtcaaca acgctggcca ccacccaccc ccacagaggc
361ctgaggagac ctctgcccag ggattccgcc agctgctgga gctgaaccta ctggggacgt
421acaccttgac caagctcgcc ctcccctacc tgcggaagag tcaagggaat gtcatcaaca
481tctccagccT GGTGGGGGCA ATCGGCCAGG CCCAGGCAGT TCCCTATGTG GCCACCAAGG
541GGGCAGTAAC AGCCATGACC AAAGCTTTGG CCCTGGATGA AAGTCCATAT GGTGTCCGAG
601TCAACTGTAT CTCCCCAGGA AACATCTGGA CCCCGCTGTG GGAGGAGCTG GCAGCCTTAA
661TGCCAGACCC TAGGGCCACA ATCCGAGAGG GCATGCTGGC CCAGCCACTG GGCCGCATGG
721GCCAGCCCGC TGAGGTCGGG GCTGCGGCAG TGTTCCTGGC CTCCGAAGCC AACTTCTGCA
781CGGGCATTGA ACTGCTCGTG ACGGGGGGTG CAGAGCTGGG GTACGGGTGC AAGGCCAGTC
841GGAGCACCCC CGTGGACGCC CCCGATATCC CTTCCTGCCC AACTTTCTTG TACAAAGTGG
901TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
961CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1021AGATCTTACT CCAAACCGTT CTCATACGCG TTAAGTCgac aatcaacctc tggattacaa
1081aatttgtgaa agatt

Download FASTA (ORF) (Full)