Construct: ORF TRCN0000468379

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008417.1_s317c1
Derived from:
ccsbBroadEn_04919
DNA Barcode:
CATTGACATGCTACCCCTCCCAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTRH1 (138428)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468379
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 138428 PTRH1 peptidyl-tRNA hydrolase 1 h... NM_001002913.3 100% 100%
2 human 138428 PTRH1 peptidyl-tRNA hydrolase 1 h... NM_001345977.1 85.5% 85.5% 462_463ins93
3 human 138428 PTRH1 peptidyl-tRNA hydrolase 1 h... NM_001345978.1 85% 68.7% 416_417ins46;546_547ins50
4 human 138428 PTRH1 peptidyl-tRNA hydrolase 1 h... NM_001345979.1 76.6% 50.4% 315_316ins100;492_493ins50
5 human 138428 PTRH1 peptidyl-tRNA hydrolase 1 h... NM_001345980.1 56% 51.8% 316_317ins146;360_361ins136
6 human 138428 PTRH1 peptidyl-tRNA hydrolase 1 h... XR_002956760.1 43.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
708
ORF length:
642
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag gccgggcggc tttttgggcg ccggacagcg gctgagtaga gccatgagcc
121gatgtgtttt ggagcctcgc cccccgggga agcggtggat ggtggctggc ctggggaatc
181ccggactgcc cggcacgcga cacagcgtgg gcatggcggt gctggggcag ctggcgcggc
241ggctgggtgt ggcggagagt tGGACGCGCG ACCGGCACTG TGCCGCCGAC CTCGCCCTGG
301CCCCGCTGGG GGATGCCCAA CTGGTCCTGC TCCGGCCACG GCGGCTTATG AACGCCAACG
361GGCGCAGCGT GGCCCGGGCT GCGGAGCTGT TTGGGCTGAC TGCCGAGGAA GTCTACCTGG
421TGCATGATGA GCTGGACAAG CCCCTGGGGA GACTGGCTCT GAAGCTGGGG GGCAGTGCCA
481GGGGCCACAA TGGAGTCCGT TCCTGCATTA GCTGCCTCAA CTCCAATGCA ATGCCAAGGC
541TGCGGGTGGG TATCGGGCGC CCGGCGCACC CTGAGGCGGT TCAGGCCCAT GTGCTGGGCT
601GCTTCTCCCC TGCTGAGCAG GAGCTGCTGC CTCTGTTGCT GGATCGAGCC ACCGACCTGA
661TCTTGGACCA CATCCGTGAG CGAAGCCAGG GGCCCTCACT GGGGCCGTGC CCAACTTTCT
721TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
781CGTAGTAATG AACTAGCCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
841GTGGAAAGGA CGACATTGAC ATGCTACCCC TCCCAGCACG CGTTAAGTCg acaatcaacc
901tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)