Construct: ORF TRCN0000468439
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013131.1_s317c1
- Derived from:
- ccsbBroadEn_02836
- DNA Barcode:
- CGAGTAGTGTGTAACCCCATCTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EID1 (23741)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468439
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23741 | EID1 | EP300 interacting inhibitor... | NM_014335.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 627
- ORF length:
- 561
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc ggaaatggct gagttgtccg agctgtatga agagagcagt gacctgcaga 121 tggatgtgat gcctggcgag ggtgaccttc cgcagatgga ggtaggcagc gggagccggg 181 agctatcccT GCGTCCCTCC CGCAGCGGGG CCCAACAGCT CGAGGAGGAA GGCCCAATGG 241 AGGAGGAGGA GGCCCAGCCA ATGGCGGCGC CAGAGGGGAA ACGGAGCCTT GCTAACGGGC 301 CCAACGCTGG GGAGCAGCCA GGCCAGGTGG CGGGCGCAGA CTTCGAGAGC GAGGACGAGG 361 GCGAGGAATT TGATGACTGG GAGGACGACT ACGACTATCC CGAAGAGGAG CAGCTCAGTG 421 GTGCCGGCTA CAGAGTATCA GCCGCTCTTG AAGAAGCCGA CAAGATGTTT CTGAGAACAA 481 GAGAACCAGC CCTGGATGGC GGGTTTCAGA TGCATTATGA GAAGACCCCG TTTGATCAGT 541 TAGCTTTTAT CGAAGAGCTT TTTTCACTGA TGGTTGTCAA TCGTCTGACC GAAGAACTCG 601 GCTGTGATGA GATTATTGAT AGAGAGTACC CAACTTTCTT GTACAAAGTG GTTGATATCG 661 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 721 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACGAGTAGT 781 GTGTAACCCC ATCTCCACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 841 aagatt