Construct: ORF TRCN0000468621

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014867.1_s317c1
Derived from:
ccsbBroadEn_11672
DNA Barcode:
TGTAAACACTATGACCAATGATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM35 (23087)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468621
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23087 TRIM35 tripartite motif containing 35 NM_001304495.2 67.9% 60.1% (many diffs)
2 human 23087 TRIM35 tripartite motif containing 35 NM_001362813.2 50.2% 51.8% 434_435ins112;507_894del
3 human 23087 TRIM35 tripartite motif containing 35 NM_171982.5 31.8% 31.5% 434_435ins112;507_1479del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
684
ORF length:
618
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gcggagtccc gacgtgtccc ccgggccttc ccgctccttc aaggaggagt
121tgctctgcgc cgtctgctac gaccccttcc gcgacgcagt cactctgcgc tgcggccaca
181acttctgccg cgggtgcgtg agccgctgct gggaggtgca ggtgtcgccc acctgcccag
241tgtgcaaaga ccgcgcgtca cccgccgacc tgcgcaccaa ccacaccctc aacaacctgg
301tggagaagct gctgcgcgag gaggccgagg gcgcgcgctg gaccagctac cgcttctcgc
361gtgtctgccg ccTGCACCGC GGACAGCTCA GCCTCTTCTG CCTCGAGGAC AAGGAGCTGC
421TGTGCTGCTC CTGCCAGGCC GACCCCCGAC ACCAGGGGCA CCGCGTGCAG CCGGTGAAGG
481ACACTGCCCA CGACTTTCGG GTGAGGAGCC TGATAGCCGA AGAGAGAAGG AACTTTTTAC
541CAACTCACCA GTGGATAGTG ACAAAGACAA GGCTCCAAAC CAGCTCTCCT AACCTTCAGT
601CCAGGAGGCA AGGCCAAGTG CAGGAACATG GAGCATGCAC TGCGGGAGAA GGCCAAGGCC
661TTCTGGGCCA TGCGGCGCTC CTATGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
721AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
781TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT GTAAACACTA
841TGACCAATGA TTGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
901att

Download FASTA (ORF) (Full)