Construct: ORF TRCN0000468636

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014680.1_s317c1
Derived from:
ccsbBroadEn_02254
DNA Barcode:
ACACCGCTACCATTGGGTAACTCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RGP1 (9827)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468636
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9827 RGP1 RGP1 homolog, RAB6A GEF com... NM_001080496.3 100% 100%
2 mouse 242406 Rgp1 RAB6A GEF compex partner 1 NM_172866.3 88.8% 96.9% (many diffs)
3 mouse 242406 Rgp1 RAB6A GEF compex partner 1 XM_006537909.3 88.8% 96.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1239
ORF length:
1173
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat tgaagtggta gcagagctca gccggggtcc tgtatttttg gctggggagg
121cgctggagtg tgtagtgacc gtcaccaacc cccttccgcc cacggccact tctgcatcca
181gtgaggccct ggcctgggcc agtgcccaaa tccactgcca gttccatgcc agtgagagtc
241gagtagcact gcctcctcct gactctagtc agccagatgt ccagcccgac agccagactg
301tctttctgcc acaccgaggt gagaggggcc agtgtatcct ttctactcca ccgaaaattc
361tattctgtga cctgaggctt gatcctggag agtccaaatc atactcctac agtgaagtgc
421tgcccataga gggaccaccc tcctttcggg gtcagtcagt caagtacgtc tacaaactga
481ccattggctg ccagcgtgtc aactccccta tcactttact cagagtccct ctgagggttc
541ttgtgctgac tggccttcag gatgtccggt ttccccagga tgaggctgta gccccatcca
601gtccattctt ggaggaggat gaaggtggga agaaagattc atggctagct gagctggctg
661gggaacgcct aatggctgcc acatcctgcc gcagcctcca tctatacaat atcagtgatg
721gccgagggaa agttgggacg tttggcatct tcaaatctgt gtacagactt ggcgaggacg
781tggtggggac cttaaactta gggGAAGGAA CCGTAGCTTG TTTGCAGTTT TCAGTCAGCT
841TACAGACCGA GGAGCGTGTA CAGCCTGAGT ACCAGCGGCG ACGTGGGGCA GGGGGTGTCC
901CCTCTGTGTC ACATGTGACT CACGCCCGGC ACCAGGAATC CTGCCTACAT ACAACTAGAA
961CCAGCTTCTC CCTCCCAATC CCTCTCAGCT CCACCCCAGG CTTCTGTACA GCCATTGTGT
1021CCTTGAAGTG GAGATTGCAT TTTGAATTTG TAACGTCCCG AGAACCAGGA TTGGTACTCC
1081TACCCCCTGT GGAACAGCCC GAACCTACCA CCTGGACAGG ACCTGAGCAA GTACCTGTAG
1141ACACCTTCAG CTGGGACCTG CCCATCAAGG TGCTGCCTAC TAGCCCCACC CTGGCCTCAT
1201ATGCTGCCCC AGGCCCCAGC ACCAGCACCA TAACCATCTG CCCAACTTTC TTGTACAAAG
1261TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1321GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1381ACGAACACCG CTACCATTGG GTAACTCCAC GCGTTAAGTC gacaatcaac ctctggatta
1441caaaatttgt gaaagatt

Download FASTA (ORF) (Full)