Construct: ORF TRCN0000468692

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012558.1_s317c1
Derived from:
ccsbBroadEn_11736
DNA Barcode:
TTGGAACTTTGTTTACTCGTGACA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SF3B3 (23450)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468692
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23450 SF3B3 splicing factor 3b subunit 3 NM_012426.5 32.7% 32.7% 1_2454del;2696C>T
2 mouse 101943 Sf3b3 splicing factor 3b, subunit 3 XM_006530520.3 55.3% 61% (many diffs)
3 mouse 101943 Sf3b3 splicing factor 3b, subunit 3 XM_017312494.1 46.5% 51.3% (many diffs)
4 mouse 101943 Sf3b3 splicing factor 3b, subunit 3 NM_133953.2 29.5% 32.6% (many diffs)
5 mouse 101943 Sf3b3 splicing factor 3b, subunit 3 XM_006530518.3 29.5% 32.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1263
ORF length:
1197
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agaggaaatg gtggaagcag caggggagga tgagcgggag ctggccgcag
121agatggcagc agcattcctc aatgaaaacc tccctgaatc catctttgga gctcccaagg
181ctggcaatgg gcagtgggcc tctgtgatcc gagtgatgaa tcccattcaa gggaacacac
241tggaccttgt ccagctggaa cagaatgagg cagcttttag tgtggctgtg tgcaggtttt
301ccaacattgg tgaagactgg tatgtgctgg tgggtgtggc caaggacctg atactaaacc
361cccgatctgt ggcagggggc ttcgtctata cttacaagct tgtgaacaat ggggaaaaac
421tggagttttt gcacaagact cctgtggaag aggtccctgc tgctattgcc ccattccagg
481ggagggtgtt gattggtgtg gggaagctgt tgcgtgtcta tgacctggga aagaagaagt
541tactccgaaa atgtgagaat aagcatattg ccaattatat ctctgggatc cagactatcg
601gacatagggt aattgtatct gatgtccaag aaagtttcat ctgggttcgc tacaagcgta
661atgaaaacca gcttatcatc tttgctgatg atacctaccc ccgatgggtc actacagcca
721gcctcctgga ctatgacact gtggctgggg cagacaagtt tggcaacata tgtgtggtga
781ggctcccacc taacaccaat gatgaagtag atgaggatcc tacaggaaac aaagccctgt
841gggaccgtgg cttgctcaat ggggccTCCC AGAAGGCAGA GGTGATCATG AACTACCATG
901TCGGGGAGAC GGTGCTGTCC TTGCAGAAGA CCACGCTGAT CCCTGGAGGC TCAGAATCAC
961TTGTCTATAC CACCTTGTCT GGAGGAATTG GCATCCTTGT GCCATTCACG TCCCATGAGG
1021ACCATGACTT CTTCCAGCAT GTGGAAATGC ACCTGCGGTC TGAACATCCC CCTCTCTGTG
1081GGCGGGACCA CCTCAGCTTT CGCTCCTACT ACTTCCCTGT GAAGAATGTG ATTGATGGAG
1141ACCTCTGTGA GCAGTTCAAT TCCATGGAAC CCAACAAACA AAAGAACGTC TCTGAAGAAC
1201TGGACCGAAC CCCACCCGAA GTGTCCAAGA AACTCGAGGA TATCCGGACC CGCTACGCCT
1261TCTGCCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1321TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1381GGCTTTATAT ATCTTGTGGA AAGGACGATT GGAACTTTGT TTACTCGTGA CAACGCGTTA
1441AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)