Construct: ORF TRCN0000468704

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003773.1_s317c1
Derived from:
ccsbBroadEn_11199
DNA Barcode:
CTGAATGCACCTTAAGTAGGCCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TPO (7173)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468704
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7173 TPO thyroid peroxidase NM_175722.3 21.5% 21.5% (many diffs)
2 human 7173 TPO thyroid peroxidase XM_024453093.1 21.2% 21.2% (many diffs)
3 human 7173 TPO thyroid peroxidase XM_024453092.1 19.4% 19.4% (many diffs)
4 human 7173 TPO thyroid peroxidase NM_001206745.1 18.7% 18.7% (many diffs)
5 human 7173 TPO thyroid peroxidase NM_175719.3 18.7% 18.7% (many diffs)
6 human 7173 TPO thyroid peroxidase XM_024453091.1 18.5% 18.4% (many diffs)
7 human 7173 TPO thyroid peroxidase NM_175721.3 18.4% 18.4% (many diffs)
8 human 7173 TPO thyroid peroxidase XM_024453090.1 18.2% 18.1% (many diffs)
9 human 7173 TPO thyroid peroxidase NM_000547.5 17.6% 17.5% (many diffs)
10 human 7173 TPO thyroid peroxidase NM_001206744.2 17.6% 17.5% (many diffs)
11 human 7173 TPO thyroid peroxidase XM_024453087.1 17.5% 17.5% (many diffs)
12 human 7173 TPO thyroid peroxidase XM_024453088.1 17.5% 17.5% (many diffs)
13 human 7173 TPO thyroid peroxidase XM_024453089.1 17.5% 17.5% (many diffs)
14 human 7173 TPO thyroid peroxidase XM_011510380.3 17.4% 17.4% (many diffs)
15 human 7173 TPO thyroid peroxidase XM_024453086.1 17.4% 17.3% (many diffs)
16 human 7173 TPO thyroid peroxidase XM_024453085.1 17.3% 17.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
588
ORF length:
522
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag agcgctggct gtgctgtctg tcacgctggt tatggcctgc acagaagcct
121tcttcccctt catctcgaga gggaaagaac tcctttgggg aaagccTGAG GAGTCTCGTG
181TCTCTAGCGT CTTGGAGGAA AGCAAGCGCC TGGTGGACAC CGCCATGTAC GCCACGATGC
241AGAGAAACCT CAAGAAAAGA GGAATCCTTT CTGCAGCTCA GCTTCTGTCT TTTTCCAAAC
301TTCCTGAGCC AACAAGCGGA GTGATTGCCC GAGCAGCAGA GATAATGGAA ACATCAATAC
361AAGCGATGAA AAGAAAAGTC AACCTGAAAA CTCAACAATC ACAGCATCCA ACGGATGCTT
421TATCAGAAGA TCTGCTGAGC ATCATTGCAA ACATGTCTGG ATGTCTCCCT TACATGCTGC
481CCCCAAAATG CCCAAACACT TGCCTGGCGA ACAAATACAG GCCCATCACA GGAGCTTGCA
541ACAACAGAAA AATGAAATAT AAGCCCGACC ATTCCGAAAC TGCCAACTAC CCAACTTTCT
601TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
661CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
721GTGGAAAGGA CGACTGAATG CACCTTAAGT AGGCCTTACG CGTTAAGTCg acaatcaacc
781tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)