Construct: ORF TRCN0000468728

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014960.1_s317c1
Derived from:
ccsbBroadEn_13233
DNA Barcode:
TGATACGCCGGGCCGCCCACTTTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MGAT5B (146664)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468728
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 146664 MGAT5B alpha-1,6-mannosylglycoprot... XM_006721707.3 26.1% 24.6% (many diffs)
2 human 146664 MGAT5B alpha-1,6-mannosylglycoprot... XM_011524350.3 25.2% 23.8% (many diffs)
3 human 146664 MGAT5B alpha-1,6-mannosylglycoprot... NM_144677.3 24.1% 22.7% (many diffs)
4 human 146664 MGAT5B alpha-1,6-mannosylglycoprot... NM_001199172.2 24.1% 22.7% (many diffs)
5 human 146664 MGAT5B alpha-1,6-mannosylglycoprot... NM_198955.1 23.8% 22.4% (many diffs)
6 human 146664 MGAT5B alpha-1,6-mannosylglycoprot... XR_934377.3 13.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
657
ORF length:
591
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agggcccccg acggctgggc cttctcccgc cccatgtgtc tgcccatccc
121tcccacaggt agacccctac ctaccctacg agtacacctg cgaggggatg ctggagcgga
181tccacgccta catccagcac caggacttct gcagagctcc agaccctgcc ctaccagagg
241cccacgcccc gcagagcccc tttgtcctgg cccccaatgc cacccacctc gagtgggctc
301ggaacaccag cttggctcct ggggcctggc cccccgcgca cgccctgcgg gcctggctgg
361ccgtgcctgg gagggcctgc accgacacct gcctggacca cgggcTAATC TGTGAGCCCT
421CCTTCTTCCC CTTCCTGAAC AGCCAGGACG CCTTCCTCAA GCTGCAGGTG CCCTGTGACA
481GCACCGAGTC GGAGATGAAC CACCTGTACC CGGCGTTCGC CCAGCCTGGC CAGGAGTGCT
541ACCTGCAGAA GGAGCCTCTG CTCTTCAGCT GCGCCGGCTC CAACACCAAG TACCGCCGGC
601TCTGCCCCTG CCGCGACTTC CGCAAGGGCC AGGTGGCCTT GTGCCAGGGC TGTCTGTGCC
661CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
721TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
781ATATATCTTG TGGAAAGGAC GATGATACGC CGGGCCGCCC ACTTTCACGC GTTAAGTCga
841caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)