Construct: ORF TRCN0000468866

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011998.1_s317c1
Derived from:
ccsbBroadEn_04529
DNA Barcode:
CTTGTTGCCGTGCCGTCGCTGGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PAGE5 (90737)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468866
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90737 PAGE5 PAGE family member 5 NM_130467.5 100% 100%
2 human 389860 PAGE2B PAGE family member 2B XM_011530785.2 85.1% 73.9% (many diffs)
3 human 90737 PAGE5 PAGE family member 5 NM_001013435.3 84.6% 84.6% 0_1ins60
4 human 389860 PAGE2B PAGE family member 2B XM_011530786.3 82.7% 75.5% (many diffs)
5 human 389860 PAGE2B PAGE family member 2B NM_001015038.3 80.1% 74.8% (many diffs)
6 human 389860 PAGE2B PAGE family member 2B XM_011530787.2 80.1% 74.8% (many diffs)
7 human 389860 PAGE2B PAGE family member 2B XM_017029513.1 80.1% 74.8% (many diffs)
8 human 203569 PAGE2 PAGE family member 2 NM_207339.4 77.8% 69.4% (many diffs)
9 human 203569 PAGE2 PAGE family member 2 XM_017029353.1 77.8% 69.4% (many diffs)
10 human 100421746 LOC100421746 PAGE family member 5 pseudo... NR_130179.1 64.5% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
456
ORF length:
390
Sequence:
1tcttccattt CAGGTGTCGT GAGGCTAGCA TCGATTGATC AACAAGTTTG TACAAAAAAG
61TTGGCATGCA GGCGCCATGG GCCGGTAATC GTGGCTGGGC TGGAACGAGG GAGGAAGTGA
121GAGATATGAG TGAGCATGTA ACAAGATCCC AATCCTCAGA AAGAGGAAAT GACCAAGAGT
181CTTCCCAGCC AGTTGGACCT GTGATTGTCC AGCAGCCCAC TGAGGAAAAA CGTCAAGAAG
241AGGAACCACC AACTGATAAT CAGGGTATTG CACCTAGTGG GGAGATCAAA AATGAAGGAG
301CACCTGCTGT TCAAGGGACT GATGTGGAAG CTTTTCAACA GGAACTGGCT CTGCTTAAGA
361TAGAGGATGC ACCTGGAGAT GGTCCTGATG TCAGGGAGGG GACTCTGCCC ACTTTTGATC
421CCACTAAAGT GCTGGAAGCA GGTGAAGGGC AACTATACCC AACTTTCTTG TACAAAGTGG
481TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
541CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
601ACTTGTTGCC GTGCCGTCGC TGGGAACGCG TTAAGTCgac aatcaacctc tggattacaa
661aatttgtgaa agatt

Download FASTA (ORF) (Full)