Construct: ORF TRCN0000468909
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006529.1_s317c1
- Derived from:
- ccsbBroadEn_15914
- DNA Barcode:
- TCATATCCATTCTCGCAACAAAGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IL26 (55801)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000468909
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55801 | IL26 | interleukin 26 | NM_018402.2 | 99.8% | 100% | 447C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 579
- ORF length:
- 513
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct ggtgaatttc attttgaggt gtgggttgct gttagtcact ctgtctcttg 121 ccattgccaa gcacaagcaa tcttccttca ccaaaagttg ttaccCAAGG GGAACATTGT 181 CCCAAGCTGT TGACGCTCTC TATATCAAAG CAGCATGGCT CAAAGCAACG ATTCCAGAAG 241 ACCGCATAAA AAATATACGA TTATTAAAAA AGAAAACAAA AAAGCAGTTT ATGAAAAACT 301 GTCAATTTCA AGAACAGCTT CTGTCCTTCT TCATGGAAGA CGTTTTTGGT CAACTGCAAT 361 TGCAAGGCTG CAAGAAAATA CGCTTTGTGG AGGACTTTCA TAGCCTTAGG CAGAAATTGA 421 GCCACTGTAT TTCCTGTGCT TCATCAGCTA GAGAGATGAA ATCCATTACC AGGATGAAAA 481 GAATATTTTA TAGGATTGGA AACAAAGGAA TTTACAAAGC CATCAGTGAA CTGGATATTC 541 TTCTTTCCTG GATTAAAAAA TTATTGGAAA GCAGTCAGTA CCCAACTTTC TTGTACAAAG 601 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 661 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 721 ACGATCATAT CCATTCTCGC AACAAAGAAC GCGTTAAGTC gacaatcaac ctctggatta 781 caaaatttgt gaaagatt