Construct: ORF TRCN0000468939

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001929.1_s317c1
Derived from:
ccsbBroadEn_07967
DNA Barcode:
CGAAAACCCGTTACCAGGAAGCGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SAMHD1 (25939)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000468939
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25939 SAMHD1 SAM and HD domain containin... NM_015474.3 99.7% 99.6% (many diffs)
2 human 25939 SAMHD1 SAM and HD domain containin... NM_001363729.2 94.1% 94% (many diffs)
3 human 25939 SAMHD1 SAM and HD domain containin... NM_001363733.2 92.9% 93.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1944
ORF length:
1878
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca gcgagccgat tccgagcagc cctccaagcg tccccgttgc gatgacagcc
121cgagaacccc ctcaaacacc ccttccgcag aggcagactg gtccccgggc ctggaactcc
181atcccgacta caagacatgg ggtccggagc aggtgtgctc cttcctcagg cgcggtggct
241ttgaagagcc ggtgctgctg aagaacatcc gagaaaatga aatcacaggc gcattactgc
301cttgtcttga tgagtctcgt tttgaaaatc ttggagtaag ttccttgggg gagaggaaga
361agctgcttag ttatatccag cgattggttc aaatccacgt tgatacaatg aaggtaatta
421atgatcctat ccatggccac attgagctcc accctctcct cgtccgaatc attgatacac
481ctcaatttca acgtcttcga tacatcaaac agctgggagg tggttactat gtttttccag
541gagcttcgca caatcgattt gagcatagtc taggggtggg gtatctagca ggatgtctag
601ttcacgcact gggtgaaaaa caaccagagc tgcagataag tgaacgagat gttctctgtg
661ttcagattgc tggactttgt catgatctcg gtcatgggcc attttctcac atgtttgatg
721gacgatttat tccacttgct cgcccggagg tgaaatggac gcatgaacaa ggctcagtta
781tgatgtttga gcaccttatt aattctaatg gaattaagcc tgtcatggaa caatatggtc
841tcatccctga agaagatatt tgctttataa aggaacaaat tgtaggacca cttgaatcac
901ctgtagaaga ttcattgtgg ccatataaag ggcgtcctga aaacaaaagc ttcctttatg
961agatagtatc taataaaaga aatggcattg atgtggacaa atgggattat tttgccaggg
1021actgccatca tcttggaatc caaaataatt ttgattacaa gcgctttatt aagtttgccc
1081gtgtctgtga agtagacaat gagttgcgta tttgtgctag agataaggaa gttggaaatc
1141tgtatgacat gttccacact cgcaactctt tacaccgtag agcttatcaa cacaaagttg
1201gcaacattat tgatacaatg attacagatg ctttcctcaa agcagatgac tacatagaga
1261ttacaggtgc tggagaaaaa aagtatcgca tttctacagc aattgacgac atggaagcct
1321atactaagct gacagataac atttttctgg agattttata ctctactgat cccaaattga
1381aagacgcacg agagatttta aaacaaattg aataccgtaa tctattcaag tatgtgggtg
1441agacgcagcc aacaggacaa ataaagatta aaaggGAGGA CTATGAATCT CTTCCAAAAG
1501AGGTTGCCAG TGCTAAACCC AAAGTATTGC TAGACGTGAA ACTGAAGGCT GAAGATTTTA
1561TAGTGGATGT TATCAACATG GATTATGGAA TGCAAGAAAA GAATCCAATT GATCATGTTA
1621GCTTCTATTG TAAGACTGCC CCCAACAGAG CAATCAGGAT TACTAAAAAC CAGGTTTCAC
1681AACTTCTGCC AGAGAAATTT GTAGAGCAGC TGATTCGAGT ATATTGTAAG AAGGTGGACA
1741GAAAGAGTTT GTATGCCGCA AGACAATATT TTGTTCAGTG GTGTGCAGAC AGAAATTTCA
1801CCAAGCCGCA GGATGGCGAT GTTATAGCCC CACTCATAAC ACCTCAAAAA AAGGAATGGA
1861ACGACAGTAC TTCAGTCCAA AATCCAACTC GCCTCCGAGA AGCATCCAAA AGCAGAGTCC
1921AGCTTTTTAA AGATGACCCA ATGTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1981AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
2041TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAC GAAAACCCGT
2101TACCAGGAAG CGTACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
2161att

Download FASTA (ORF) (Full)