Construct: ORF TRCN0000469031

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001832.1_s317c1
Derived from:
BRDN0000394342
DNA Barcode:
ATCCTAATTAAACGCCGTGTGGCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
R3HDM2 (22864)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469031
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22864 R3HDM2 R3H domain containing 2 XM_017019032.1 99.6% 99.6% (many diffs)
2 human 22864 R3HDM2 R3H domain containing 2 XM_017019033.1 99.6% 99.6% (many diffs)
3 human 22864 R3HDM2 R3H domain containing 2 XM_017019031.1 94.6% 94.6% (many diffs)
4 human 22864 R3HDM2 R3H domain containing 2 XM_024448888.1 90.3% 90.3% (many diffs)
5 human 22864 R3HDM2 R3H domain containing 2 XM_024448887.1 77.3% 77.3% (many diffs)
6 human 22864 R3HDM2 R3H domain containing 2 XM_024448886.1 75.6% 75.6% (many diffs)
7 human 22864 R3HDM2 R3H domain containing 2 XM_017019029.2 67.6% 67.6% (many diffs)
8 human 22864 R3HDM2 R3H domain containing 2 XM_017019020.1 67.1% 67.1% (many diffs)
9 human 22864 R3HDM2 R3H domain containing 2 NM_001351217.2 66.2% 66.2% (many diffs)
10 human 22864 R3HDM2 R3H domain containing 2 NM_001351218.2 66.2% 66.2% (many diffs)
11 human 22864 R3HDM2 R3H domain containing 2 NM_001330123.2 65.7% 65.7% (many diffs)
12 human 22864 R3HDM2 R3H domain containing 2 NM_014925.5 65% 65% (many diffs)
13 human 22864 R3HDM2 R3H domain containing 2 XM_017019012.1 64.9% 64.9% (many diffs)
14 human 22864 R3HDM2 R3H domain containing 2 XM_017019009.1 64.5% 64.5% (many diffs)
15 human 22864 R3HDM2 R3H domain containing 2 NM_001351216.2 64.2% 64.2% (many diffs)
16 human 22864 R3HDM2 R3H domain containing 2 XM_024448885.1 64.2% 64.2% (many diffs)
17 human 22864 R3HDM2 R3H domain containing 2 XM_017019008.1 64.2% 64.2% (many diffs)
18 human 22864 R3HDM2 R3H domain containing 2 NM_001351212.2 64% 64% (many diffs)
19 human 22864 R3HDM2 R3H domain containing 2 NM_001351213.2 64% 64% (many diffs)
20 human 22864 R3HDM2 R3H domain containing 2 NM_001351214.2 64% 64% (many diffs)
21 human 22864 R3HDM2 R3H domain containing 2 NM_001351215.2 64% 64% (many diffs)
22 human 22864 R3HDM2 R3H domain containing 2 NM_001351211.2 63.6% 63.6% (many diffs)
23 human 22864 R3HDM2 R3H domain containing 2 XM_017019004.1 63.6% 63.6% (many diffs)
24 human 22864 R3HDM2 R3H domain containing 2 XM_017019003.1 63.5% 63.5% (many diffs)
25 human 22864 R3HDM2 R3H domain containing 2 NM_001351209.2 62.9% 62.9% (many diffs)
26 human 22864 R3HDM2 R3H domain containing 2 XM_017019002.1 62.9% 62.9% (many diffs)
27 human 22864 R3HDM2 R3H domain containing 2 NM_001330121.2 62.8% 62.8% (many diffs)
28 human 22864 R3HDM2 R3H domain containing 2 NM_001330122.2 62.8% 62.8% (many diffs)
29 human 22864 R3HDM2 R3H domain containing 2 XM_017019015.1 62.7% 62.7% (many diffs)
30 human 22864 R3HDM2 R3H domain containing 2 XM_011538040.1 62.5% 62.5% (many diffs)
31 human 22864 R3HDM2 R3H domain containing 2 XM_017019000.1 62.3% 62.3% (many diffs)
32 human 22864 R3HDM2 R3H domain containing 2 XM_011538039.1 62.1% 62.1% (many diffs)
33 human 22864 R3HDM2 R3H domain containing 2 XM_011538038.1 62% 62% (many diffs)
34 human 22864 R3HDM2 R3H domain containing 2 NM_001351208.2 62% 62% (many diffs)
35 human 22864 R3HDM2 R3H domain containing 2 XM_017019013.1 62% 62% (many diffs)
36 human 22864 R3HDM2 R3H domain containing 2 XM_024448884.1 62% 62% (many diffs)
37 human 22864 R3HDM2 R3H domain containing 2 NM_001351207.2 61.5% 61.5% (many diffs)
38 human 22864 R3HDM2 R3H domain containing 2 XM_011538037.1 61.4% 61.4% (many diffs)
39 human 22864 R3HDM2 R3H domain containing 2 XM_017019010.1 61.4% 61.4% (many diffs)
40 human 22864 R3HDM2 R3H domain containing 2 XM_011538036.1 61.1% 61.1% (many diffs)
41 human 22864 R3HDM2 R3H domain containing 2 XM_011538035.1 60.9% 60.9% (many diffs)
42 human 22864 R3HDM2 R3H domain containing 2 NM_001351204.2 60.9% 60.9% (many diffs)
43 human 22864 R3HDM2 R3H domain containing 2 NM_001351205.2 60.9% 60.9% (many diffs)
44 human 22864 R3HDM2 R3H domain containing 2 NM_001351206.2 60.9% 60.9% (many diffs)
45 human 22864 R3HDM2 R3H domain containing 2 XM_017018998.1 60.6% 60.6% (many diffs)
46 human 22864 R3HDM2 R3H domain containing 2 XM_011538033.1 60.4% 60.4% (many diffs)
47 human 22864 R3HDM2 R3H domain containing 2 XM_011538031.1 60.1% 60.1% (many diffs)
48 human 22864 R3HDM2 R3H domain containing 2 XM_024448883.1 59.6% 59.6% (many diffs)
49 human 22864 R3HDM2 R3H domain containing 2 XM_011538042.2 59.1% 59.1% (many diffs)
50 human 22864 R3HDM2 R3H domain containing 2 XM_017018999.2 59.1% 59.1% (many diffs)
51 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514165.2 81.9% 82.4% (many diffs)
52 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514166.2 81.9% 82.4% (many diffs)
53 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514164.2 60.4% 63.1% (many diffs)
54 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514163.2 59.3% 61.9% (many diffs)
55 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514162.2 58.4% 61% (many diffs)
56 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514161.2 58.3% 60.9% (many diffs)
57 mouse 71750 R3hdm2 R3H domain containing 2 NM_027900.4 58% 60.6% (many diffs)
58 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514160.2 57.4% 60% (many diffs)
59 mouse 71750 R3hdm2 R3H domain containing 2 NM_001168293.1 57.3% 59.8% (many diffs)
60 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514159.2 57.3% 59.8% (many diffs)
61 mouse 71750 R3hdm2 R3H domain containing 2 XM_017314104.1 57.3% 59.8% (many diffs)
62 mouse 71750 R3hdm2 R3H domain containing 2 XM_017314105.1 57.3% 59.8% (many diffs)
63 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514158.2 56.5% 59% (many diffs)
64 mouse 71750 R3hdm2 R3H domain containing 2 XM_017314103.1 56.5% 59% (many diffs)
65 mouse 71750 R3hdm2 R3H domain containing 2 NM_001168292.1 55.5% 58% (many diffs)
66 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514152.2 55.5% 58% (many diffs)
67 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514153.2 55.5% 58% (many diffs)
68 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514154.3 55.5% 58% (many diffs)
69 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514155.3 55.5% 58% (many diffs)
70 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514156.3 55.5% 58% (many diffs)
71 mouse 71750 R3hdm2 R3H domain containing 2 XM_006514157.2 55.5% 58% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1980
ORF length:
1911
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcgaccccct gtcaccagcg ctagcagctt cagtggaatc tctatcctta
121cccgaggtga cagcatcggc agcagtaaag gcggcagtgc gggaaggatc tccaggccag
181gtatggcact aggtgcccca gaagtgtgca accaggtcac ctcatcccag tctgtccggg
241ggcttctccc ttgtactgcc cagcagcaac agcagcagca gcagcagcaa cttcctgctc
301tcccacccac gcctcagcaa cagccaccct tgaataatca catgatctca caggcagatg
361acctcagcaa cccctttgga caaatgagcc ttagtcgcca aggttctact gaagcagctg
421acccatctgc agctctattc cagaccccac ttatctccca gcaccctcag cagactagct
481tcatcatggc ttccacgggt cagcccctcc ccacttccaa ctattccacc tctagccatg
541caccacctac tcagcaagtt ctgccacccc aggggtacat gcagccccct caacagatcc
601aggtttctta ctatccccct ggacaatatc ctaactccaa ccagcaatat cgacctctct
661ctcacccggt ggcctatagc ccccaacgtg gtcagcagct gcctcagcca tcccagcagc
721ctggtttaca gcccatgatg cctaaccagc agcaggcggc ttaccaaggc atgattgggg
781tccagcagcc acagaaccag ggcctgctca gcagccagag gagcagcatg gggggccaga
841tgcaaggcct ggtggttcag tacactccac tgccttctta ccaagttcca gtgggtagtg
901actcgcaaaa tgtggtccag ccgcctttcc agcaacccat gctggtccct gtgagccagt
961ctgtgcaagg aggcctccca gcagcggggg taccagtgta ctatagcatg atcccacctg
1021ctcagcagaa cggtacgagc ccttctgtag ggtttctgca accccctggc tctgagcagt
1081accagatgcc tcagtctccc tctccctgca gtccaccaca gatgccacag cagtactcag
1141gagtgtcacc ttctggacca ggtgtagtgg tcatgcagct gaatgtccct aatggacccc
1201agccccctca gaacccatcc atggtccagt ggagtcattg taaatactac agcatggacc
1261agcgggggca gaagcctgga gacctgtaca gtcctgacag cagcccccag gccaacacac
1321aaatgagcag cagccctgtc acatctccta cccagtctcc agcacccccc cctgtcacca
1381gcctcagcag tgtctgcaca ggactcagtc ccctgcctgt cctcacacag ttcccccggc
1441ctgggggtcc agcacagggt gatgggcgct actccctttt gggccagcca ttacagtaca
1501atctgtccat ctgccctccc ttgctccatg gccagtcaac ttacacggtg caccagggac
1561agagtggact gaaacatgga aaccggggca agagacaagc actcaaatct gcctccactg
1621acctggGGAC AGCAGATGTT GTCCTGGGGC GGGTGCTGGA GGTGACAGAT CTCCCTGAGG
1681GCATCACCCG TACTGAGGCG GACAAACTCT TCACGCAGCT CGCCATGTCT GGCGCCAAGA
1741TCCAGTGGCT CAAGGATGCT CAGGGTCTGC CTGGAGGGGG TGGGGGGGAC AACAGTGGGA
1801CTGCTGAGAA TGGCCGCCAC TCGGACCTCG CTGCCTTGTA CACCATTGTG GCTGTGTTCC
1861CCAGCCCCCT GGCTGCCCAA AATGCCTCCC TTCGTCTCAA CAACTCCGTG AGTCGCTTCA
1921AACTTCGAAT GGCCAAAAAG AACTATGACC TGAGGATCCT GGAGCGAGCC AGCTCCCAAT
1981TGCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
2041GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
2101TTTATATATC TTGTGGAAAG GACGAATCCT AATTAAACGC CGTGTGGCGA CGCGTTAAGT
2161Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)