Construct: ORF TRCN0000469161

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012384.1_s317c1
Derived from:
ccsbBroadEn_07834
DNA Barcode:
CGATCTATAGTCTGGTGGCTGGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GGA2 (23062)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469161
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23062 GGA2 golgi associated, gamma ada... NM_015044.4 99.8% 99.8% 90C>G;1270G>C
2 human 23062 GGA2 golgi associated, gamma ada... XM_024450200.1 93.9% 93.8% 0_1ins111;1159G>C
3 human 23062 GGA2 golgi associated, gamma ada... XM_017023075.1 85.7% 85.6% 0_1ins261;1009G>C
4 mouse 74105 Gga2 golgi associated, gamma ada... NM_028758.2 82.2% 84.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1905
ORF length:
1839
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcgaccgcg gtggcggcgg ctgtggcggg aaccgagtcg gcccagggtc
121ccccgggccc ggcagcgtcg ctggagctgt ggctgaacaa agccacagac ccaagcatgt
181cggaacagga ttggtcagct atccagaatt tctgtgagca ggtgaacact gaccccaatg
241gccccacaca tgcgccctgg ctactggccc acaagatcca gtctccgcaa gagaaggaag
301ctctttatgc cttaacggtg ctggagatgt gcatgaacca ctgtggggag aagttccaca
361gcgaggtggc caaatttcgt ttcctgaacg aactgatcaa agtgttgtcc ccaaagtacc
421tggggtcctg ggccacagga aaagttaaag gaagagtcat tgaaatactc ttcagttgga
481cagtctggtt tccggaagac atcaagattc gagacgctta tcagatgctg aagaaacaag
541gaattataaa acaagaccct aaactaccag tggataaaat cttaccccca ccatctccct
601ggcccaagag ctccatcttt gatgctgatg aagaaaagtc caagcttctg acaaggcttc
661taaagagcaa ccaccccgag gaccttcagg ctgcaaaccg gttaatcaag aatttggtca
721aggaggaaca agaaaaatcg gagaaggtgt ccaagagggt cagtgcggtg gaggaagtgc
781gaagccatgt gaaggtgctg caggagatgc tgagcatgta ccgcaggcca gggcaggccc
841cgcccgacca ggaggccctg caggtcgtgt atgagaggtg tgaaaagctg cggcccacgc
901tgttccggtt ggcgagtgac accactgatg acgatgatgc actcgcggaa attctccagg
961caaatgacct cctcacccaa ggagttctgc tgtacaaaca ggtgatggag ggccgggtca
1021cctttggaaa cagagtgacc agctcattgg gagacatccc tgtctccaga gtctttcaga
1081atccagcagg ctgcatgaag acctgccccc tgattgactt ggaggtggac aatggacctg
1141cgcagatggg gactgtggtg ccatctttgc ttcatcagga cctggcagcc ttgggaatca
1201gtgatgctcc tgttacaggc atggtttctg gtcagaattg ctgtgaggaa aagaggaatc
1261cctcctccag cacgctgcca ggcggtggtg ttcagaaccc ttctgcagac aggaatttgc
1321tggacctcct ctcaccacag ccagctccgt gccctctgaa ttatgtttcg cagaaaagtg
1381tccccaagga agtgccacca ggtactaagt cctctccagg ttggtcctgg gaggctggcc
1441cgttggctcc ttccccatct tcacagaata cacctctggc tcaagtgttt gtccctttgg
1501agtctgttaa gcccagcagc ctgccgcctc tcattgtgta tgaccggaat ggattcagaa
1561tTCTGCTCCA CTTCTCCCAG ACGGGAGCCC CTGGGCACCC AGAGGTACAG GTGCTGCTCT
1621TGACCATGAT GAGCACGGCT CCCCAGCCTG TCTGGGATAT CATGTTTCAA GTGGCTGTGC
1681CAAAGTCAAT GAGAGTGAAG CTGCAGCCGG CATCCAGCTC CAAGCTTCCT GCATTCAGTC
1741CTTTGATGCC TCCAGCTGTG ATATCTCAGA TGCTGCTGCT TGACAATCCA CACAAAGAAC
1801CTATCCGCTT ACGGTACAAG CTGACATTCA ACCAAGGTGG ACAGCCTTTC AGCGAAGTAG
1861GAGAAGTGAA AGACTTCCCA GACCTGGCTG TCTTGGGCGC AGCCTACCCA ACTTTCTTGT
1921ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
1981AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
2041GAAAGGACGA CGATCTATAG TCTGGTGGCT GGACACGCGT TAAGTCgaca atcaacctct
2101ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)