Construct: ORF TRCN0000469222

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010667.1_s317c1
Derived from:
ccsbBroadEn_12643
DNA Barcode:
AATTGCGGAGTACAACATACCCGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MAGIX (79917)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469222
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79917 MAGIX MAGI family member, X-linked XM_005278064.4 77.8% 73.9% 502_516del;775_776insG;825_826ins215
2 human 79917 MAGIX MAGI family member, X-linked XM_005278065.3 77.8% 73.9% 502_516del;775_776insG;825_826ins215
3 human 79917 MAGIX MAGI family member, X-linked XM_011543985.2 77.8% 73.9% 502_516del;775_776insG;825_826ins215
4 human 79917 MAGIX MAGI family member, X-linked XM_011543986.2 77.8% 73.9% 502_516del;775_776insG;825_826ins215
5 human 79917 MAGIX MAGI family member, X-linked XM_011543987.2 77.8% 73.9% 502_516del;775_776insG;825_826ins215
6 human 79917 MAGIX MAGI family member, X-linked XM_005278063.4 64.9% 54.6% (many diffs)
7 human 79917 MAGIX MAGI family member, X-linked XM_005278062.4 64.1% 53.9% (many diffs)
8 human 79917 MAGIX MAGI family member, X-linked XM_006724560.3 62.7% 53.4% (many diffs)
9 human 79917 MAGIX MAGI family member, X-linked NM_024859.3 61.9% 52.7% (many diffs)
10 human 79917 MAGIX MAGI family member, X-linked NM_001099682.2 57.2% 41.7% (many diffs)
11 human 79917 MAGIX MAGI family member, X-linked NM_001099681.2 56.4% 41.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1095
ORF length:
1026
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gccactattg tggatcaccg gccccaggta ccatctcatc cttctatcgg
121aggcctcctg cctcagggca aactatgtac acctgtgtcc tttattccag caccgttggt
181tagagacatg taacgcacct ccccaattga tccagggtaa ggcacgtagt gctccgaagc
241catcccaggc ctctggtcat ttctctgtgg agctggttcg cggttacgca ggctttggcc
301tcaccttagg tgggggccgg gatgtagctg gggacactcc gctggccgtg cgcgggctgc
361tgaaggatgg cccagcacag cgctgtggtc gtttggaggt cggggacctc gtgctccaca
421tcaacggaga gtcaacgcag ggcctcaccc atgcccaggc cgtggagcgg atccgagctg
481gaggccccca gctccacctg gttattcgtc ggcctctgga gacccaccct ggcaagcctc
541gaggggtggg agagccccga aaaggagttg atcgcagccc agatcctgga gggccggagg
601taacggggtc tcgcagcagc agcacttccc tagttcagca ccctccatcc cggacgacgc
661tcaagaagac ccggggcagc ccggagccta gtccagaggc ggccgccgat ggccccacgg
721tttctcctcc TGAGCGCCGC GCTGAGGATC CCAACGACCA GATCCCGGGT TCCCCGGGGC
781CCTGGCTAGT GCCCAGCGAG GAACGGCTCT CGCGGGCCCT AGGGGTCCGG GGGGGCAGCG
841CAGCTCGCTC AGGAGATGGC AGCCGGAAGG CGGAGACACT GAGCCTACCT CTGACAGCGC
901GGGGCTCACT AGTTACCGCC CAACCTGGAT CCGGCGCGTG TGGCCGCTGG GCACTTGGCA
961CCTCCCCAAG AGCTTCCACT TGGTTTGGTC CCCCCACCCG CTGCTCAGTG GCTCTGACCA
1021CACTCCCCTC GCAGCGTCAG TGGTACGACC CTTCCAGCCG GCTAGCCTGC GCTTCTGGTT
1081CTGGGAGGGG GAGGTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
1141CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
1201TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA AATTGCGGAG TACAACATAC
1261CCGCACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)