Construct: ORF TRCN0000469351

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012306.1_s317c1
Derived from:
ccsbBroadEn_02316
DNA Barcode:
CTTCGTCCACTGCTTACGCTCTCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CTDSP2 (10106)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469351
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10106 CTDSP2 CTD small phosphatase 2 NM_005730.4 100% 100%
2 human 10106 CTDSP2 CTD small phosphatase 2 XM_005268556.2 97.8% 97.8% 252_269del
3 mouse 52468 Ctdsp2 CTD (carboxy-terminal domai... NM_001113470.1 89.9% 94.4% (many diffs)
4 mouse 52468 Ctdsp2 CTD (carboxy-terminal domai... XM_017314028.1 82% 86.1% (many diffs)
5 mouse 52468 Ctdsp2 CTD (carboxy-terminal domai... NM_146012.2 39.7% 42% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
879
ORF length:
813
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga acacggctcc atcatcaccc aggcgcggag ggaagacgcc ctggtgctca
121ccaagcaagg cctggtctcc aagtcctctc ctaagaagcc tcgtggacgt aacatcttca
181aggccctttt ctgctgtttt cgcgcccagc atgttggcca gtcaagttcc tccactgagc
241tcgctgcgta taaggaggaa gcaaacacca ttgctaagtc ggatctgctc cagtgtctcc
301agtaccagtt ctaccagatc ccagggacct gcctgctccc agaggtgaca gaggaagatc
361aaggaaggat ctgtgtggtc attgacctcg atgaaaccct tgtgcatagc tcctttaagc
421caatcaacaa tgctgacttc atagtgccta tagagattga ggggaccact caccaggtgt
481atgtgctcaa gaggccttat gtggatgagt tcctgagacg catgggggaa ctctttgaat
541gtgttctctt cactgccagc ctggccaagt atgccgaccc tgtgacagac ctgctggacc
601ggtgtggggt gttccgggcc cgcctattcc gtgagtcttg cgtgttccac cagggctgct
661acgtcaagga ccTCAGCCGC CTGGGGAGGG ACCTGAGAAA GACCCTCATC CTGGACAACT
721CGCCTGCTTC TTACATATTC CACCCCGAGA ATGCAGTGCC TGTGCAGTCC TGGTTTGATG
781ACATGGCAGA CACTGAGTTG CTGAACCTGA TCCCAATCTT TGAGGAGCTG AGCGGAGCAG
841AGGACGTCTA CACCAGCCTT GGGCAGCTGC GGGCCCCTTA CCCAACTTTC TTGTACAAAG
901TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
961GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1021ACGACTTCGT CCACTGCTTA CGCTCTCTAC GCGTTAAGTC gacaatcaac ctctggatta
1081caaaatttgt gaaagatt

Download FASTA (ORF) (Full)