Construct: ORF TRCN0000469423

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002513.1_s317c1
Derived from:
ccsbBroadEn_11062
DNA Barcode:
GGACTTCGACTGTAAGCTACCGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRSS3 (5646)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469423
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5644 PRSS1 serine protease 1 NM_002769.5 97.5% 95.1% (many diffs)
2 human 5646 PRSS3 serine protease 3 NM_002771.3 93.7% 91.4% (many diffs)
3 human 5645 PRSS2 serine protease 2 NM_002770.4 91.9% 86.6% (many diffs)
4 human 5646 PRSS3 serine protease 3 NM_001197098.1 89% 86.3% (many diffs)
5 human 5645 PRSS2 serine protease 2 NM_001303414.1 86.9% 81.9% (many diffs)
6 human 5646 PRSS3 serine protease 3 NM_001197097.2 85.5% 81.9% (many diffs)
7 human 154754 PRSS3P2 PRSS3 pseudogene 2 NR_001296.3 79.4% (many diffs)
8 human 5645 PRSS2 serine protease 2 NR_130149.2 75.6% (many diffs)
9 human 5646 PRSS3 serine protease 3 NM_007343.3 74.1% 71.3% (many diffs)
10 human 5646 PRSS3 serine protease 3 XM_011517965.1 66.9% 62.4% (many diffs)
11 human 5644 PRSS1 serine protease 1 XM_011516411.1 51% 49.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
810
ORF length:
741
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gaatccattc ctgatccttg cctttgtggg agctgctgtt gctgtcccct
121ttgacgatga tgacaagatt gttgggggct acacctgtga ggagaattct ctcccctacc
181aggtgtccct gaattctggc tcccacttct gcggtggctc cctcatcagc gaacagtggg
241tggtatcagc agctcactgc tacaagaccc gcatccaggt gagactggga gagcacaaca
301tcaaagtcct ggaggggaat gagcagttca tcaatgcagc caagatcatc cgccaccccc
361aatacgacag gaagactctg aacaatgaca tcatgttaat caagctctcc tcacgtgcag
421taatcaacgc ccgcgtgtcc accatctctc tgcccaccgc ccctccagcc actggcacga
481agtgcctcat ctctggctgg ggcaacactg cgagctctgg cgccgactac ccagacgagc
541tgcagtgcct ggacgctcct gtgcTGAGCC AGGCTAAGTG TGAAGCCTCC TACCCTGGAA
601AGATTACCAG CAACATGTTC TGTGTGGGCT TCCTTGAGGG AGGCAAGGAT TCATGTCAGG
661GTGATTCTGG TGGCCCTGTG GTCTGCAATG GACAGCTCCA AGGAGTTGTC TCCTGGGGTG
721ATGGCTGTGC CCAGAAGAAC AAGCCTGGAG TCTACACCAA GGTCTACAAC TATGTGAAAT
781GGATTAAGAA CACCATAGCT GCCAACAGCT TGCCAACTTT CTTGTACAAA GTGGTTGATA
841TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
901CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAGGACT
961TCGACTGTAA GCTACCGGGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1021tgaaagatt

Download FASTA (ORF) (Full)