Construct: ORF TRCN0000469495
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009355.1_s317c1
- Derived from:
- ccsbBroadEn_10355
- DNA Barcode:
- GTTTCCCTTAAGACACCTTTAAGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC00298 (339788)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469495
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 339788 | LINC00298 | long intergenic non-protein... | NR_015405.1 | 15.6% | 1_144del;484_2165del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 432
- ORF length:
- 339
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA CCATGTTCCC AGGAGCTGCC TATGGGATTC 121 AAGAAAACTG TATGAGAGGA GTAACATTTG GGCTGGAAGC GAAAATACAA GTAAACATAT 181 GTCAAATGGG GTCTGGAAAG CAATCCTCCA CAGAAAGAAA GCAGAATCTT CTGGGCATTT 241 CTGAGCAAGT GGACTTCCTT CAGCTGAGCA CAGTCCTCAG GAGAAGCGGA CAGGTGCAAA 301 GTGTTGGAAG CCAACACTCA CAGCAGTTGG GGGTTGGAGT GCTCTGGCTT CCAACAGCAT 361 TGAAACCAAC AGCATTGACT ACAGCGAGTT TCTCAATCTT CAGAACACAT CCCAGCCTCC 421 CTGGGGGCTG CTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 481 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 541 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAGTT TCCCTTAAGA CACCTTTAAG 601 GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t