Construct: ORF TRCN0000469527
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012891.1_s317c1
- Derived from:
- ccsbBroadEn_06922
- DNA Barcode:
- CCGGGTGGTCCCCTCGGAGTTTGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCL24 (6369)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469527
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6369 | CCL24 | C-C motif chemokine ligand 24 | NM_001371193.1 | 99.7% | 99.1% | 170C>T |
| 2 | human | 6369 | CCL24 | C-C motif chemokine ligand 24 | NM_002991.3 | 99.7% | 99.1% | 170C>T |
| 3 | human | 6369 | CCL24 | C-C motif chemokine ligand 24 | XM_011516460.2 | 99.7% | 99.1% | 170C>T |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 423
- ORF length:
- 357
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc aggcctgatg accatagtaa ccagccttct gttccttggt gtctgtgccc 121 accacatcat ccctacgggc tctgtggTCA TCCCCTCTCC CTGCTGCATG TTCTTTGTTT 181 CCAAGAGAAT TCCTGAGAAC CGAGTGGTCA GCTACCAGCT GTCCAGCAGG AGCATATGCC 241 TCAAGGCAGG AGTGATCTTC ACCACCAAGA AGGGCCAGCA GTTCTGTGGC GACCCCAAGC 301 AGGAGTGGGT CCAGAGGTAC ATGAAGAACC TGGACGCCAA GCAGAAGAAG GCTTCCCCTA 361 GGGCCAGGGC AGTGGCTGTC AAGGGCCCTG TCCAGAGATA TCCTGGCAAC CAAACCACCT 421 GCTACCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 481 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 541 GGCTTTATAT ATCTTGTGGA AAGGACGACC GGGTGGTCCC CTCGGAGTTT GGACGCGTTA 601 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt