Construct: ORF TRCN0000469922
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000981.1_s317c1
- Derived from:
- ccsbBroadEn_13134
- DNA Barcode:
- TACACGATACCCCGTGCTGAGACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1orf87 (127795)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469922
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 127795 | C1orf87 | chromosome 1 open reading f... | XM_017000307.1 | 27.7% | 27.7% | 1_1080del |
| 2 | human | 127795 | C1orf87 | chromosome 1 open reading f... | NM_152377.3 | 25.2% | 25.2% | 1_1224del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 480
- ORF length:
- 414
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga gcctgaagtc cccgagatgt ctcaaagcaa aactgaacat atgaaaactc 121 cagaagagga gctgcagcca gaaagctctc ctgctgaaac ttcagcctgc aaagatcctc 181 tgaaaccttt aaagatcagg ccagtcTCCC AGCCCTTCGT GAATCCAGCT GTGAAGAACA 241 AGGCTGAGGA ATGTGAGACG TGGATAGACA GGTTCAGGAA GCTGGAAAAT GCCCTCTACC 301 TGTGTGATCT GAGTAACACA GGAGTTCTGG AGAAGGAACG AGCCAGACGC CTCATTCACA 361 ACTACAATCT CATTTACAAC CTGTCCCTGA GCCCTCAGAA AATCGACCAG GCCTTGCGCA 421 GATTCCGTTC GGGAGAAAAT ATGCTCTTGG AGCCAGCACT GCGGTACTTA AAGGAGCTAT 481 GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 541 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 601 TTTATATATC TTGTGGAAAG GACGATACAC GATACCCCGT GCTGAGACCA CGCGTTAAGT 661 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt