Construct: ORF TRCN0000469945

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013538.1_s317c1
Derived from:
ccsbBroadEn_07714
DNA Barcode:
CTAGCTCGCTAATATATAACGAAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
OS9 (10956)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469945
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10956 OS9 OS9 endoplasmic reticulum l... NM_001017956.2 99.9% 100% 1056C>T
2 human 10956 OS9 OS9 endoplasmic reticulum l... NM_001261420.1 99.7% 99.8% 790_792delGTA;1059C>T
3 human 10956 OS9 OS9 endoplasmic reticulum l... NM_001017957.2 97.4% 97.5% 1056C>T;1361_1362ins45
4 human 10956 OS9 OS9 endoplasmic reticulum l... XM_006719201.2 97.3% 97.3% 790_792delGTA;1059C>T;1364_1365ins45
5 human 10956 OS9 OS9 endoplasmic reticulum l... NM_001261421.1 94.3% 94.4% 479_480ins99;691_693delGTA;960C>T
6 human 10956 OS9 OS9 endoplasmic reticulum l... NM_006812.4 91.7% 91.7% 1056C>T;1598_1762del
7 human 10956 OS9 OS9 endoplasmic reticulum l... XM_005268581.2 91.5% 91.6% 790_792delGTA;1059C>T;1601_1765del
8 human 10956 OS9 OS9 endoplasmic reticulum l... NM_001261422.1 91.4% 91.5% 423_424ins156;900C>T
9 human 10956 OS9 OS9 endoplasmic reticulum l... NM_001017958.2 89.4% 89.5% 1056C>T;1361_1362ins45;1553_1717del
10 human 10956 OS9 OS9 endoplasmic reticulum l... XM_006719200.2 89.3% 89.3% (many diffs)
11 human 10956 OS9 OS9 endoplasmic reticulum l... NM_001261423.1 87.8% 87.9% 160_161ins177;879C>T;1184_1185ins45
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1902
ORF length:
1836
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcggaaacg ctgctgtcca gtttgttagg actgctgctt ctgggactcc
121tgttacccgc aagtctgacc ggcggtgtcg ggagcctgaa cctggaggag ctgagtgaga
181tgcgttatgg gatcgagatc ctgccgttgc ctgtcatggg agggcagagc caatcttcgg
241acgtggtgat tgtctcctct aagtacaaac agcgctatga gtgtcgcctg ccagctggag
301ctattcactt ccagcgtgaa agggaggagg aaacacctgc ttaccaaggg cctgggatcc
361ctgagttgtt gagcccaatg agagatgctc cctgcttgct gaagacaaag gactggtgga
421catatgaatt ctgttatgga cgccacatcc agcaatacca catggaagat tcagagatca
481aaggtgaagt cctctatctc ggctactacc aatcagcctt cgactgggat gatgaaacag
541ccaaggcctc caagcagcat cgtcttaaac gctaccacag ccagacctat ggcaatgggt
601ccaagtgcga ccttaatggg aggccccggg aggccgaggt tcggttcctc tgtgacgagg
661gtgcaggtat ctctggggac tacatcgatc gcgtggacga gcccttgtcc tgctcttatg
721tgctgaccat tcgcactcct cggctctgcc cccaccctct cctccggccc ccacccagtg
781ctgcaccgca ggccatcctc tgtcaccctt ccctacagcc tgaggagtac atggcctacg
841ttcagaggca agccgactca aagcagtatg gagataaaat catagaggag ctgcaagatc
901taggccccca agtgtggagt gagaccaagt ctggggtggc accccaaaag atggcaggtg
961cgagcccgac caaggatgac agtaaggact cagatttctg gaagatgctt aatgagccag
1021aggaccaggc cccaggaggg gaggaggtgc cggctgagga gcaggaccca agccctgagg
1081cagcagattc agcttctggt gctcccaatg attttcagaa taacgtgcag gtcaaagtca
1141ttcgaagccc tgcggatttg attcgattca tagaggagct gaaaggtgga acaaaaaagg
1201ggaagccaaa tataggccaa gagcagcctg tggatgatgc tgcagaagtc cctcagaggg
1261aaccagagaa ggaaaggggt gatccagaac ggcagagaga gatggaagaa gaggaggatg
1321aggatgagga tgaggatgaa gatgaggatg aacggcagtt actgggagaa tttgagaagg
1381aactggaagg gatcctgctt ccgtcagacc gagaccggct ccgttcggag gtgaaggctg
1441gcatggagcg ggaactggaa aacatcaTCC AGGAGACAGA GAAAGAGCTG GACCCAGATG
1501GGCTGAAGAA GGAGTCAGAG CGGGATCGGG CAATGCTGGC TCTCACATCC ACTCTCAACA
1561AACTCATCAA AAGACTGGAG GAAAAACAGA GTCCAGAGCT GGTGAAGAAG CACAAGAAAA
1621AGAGGGTTGT CCCCAAAAAG CCTCCCCCAT CACCCCAACC TACAGGGAAA ATTGAGATCA
1681AAATTGTCCG CCCATGGGCT GAAGGGACTG AAGAGGGTGC ACGTTGGCTG ACTGATGAGG
1741ACACGAGAAA CCTCAAGGAG ATCTTCTTCA ATATCTTGGT GCCGGGAGCT GAAGAGGCCC
1801AGAAGGAACG CCAGCGGCAG AAAGAGCTGG AGAGCAATTA CCGCCGGGTG TGGGGCTCTC
1861CAGGTGGGGA GGGCACAGGG GACCTGGACG AATTTGACTT CTGCCCAACT TTCTTGTACA
1921AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
1981AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
2041AGGACGACTA GCTCGCTAAT ATATAACGAA AACGCGTTAA GTCgacaatc aacctctgga
2101ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)