Construct: ORF TRCN0000470089
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001230.1_s317c1
- Derived from:
- BRDN0000395171
- DNA Barcode:
- AACAGTTCCGGATAACTTATAACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UHRF1BP1L (23074)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470089
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019049.1 | 87% | 86.3% | (many diffs) |
| 2 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019047.1 | 69.8% | 69.3% | (many diffs) |
| 3 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | NM_015054.2 | 68.8% | 68.3% | (many diffs) |
| 4 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_005268738.3 | 65.6% | 65.1% | (many diffs) |
| 5 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_005268739.4 | 64.7% | 64.2% | (many diffs) |
| 6 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019048.2 | 61.4% | 60.9% | (many diffs) |
| 7 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XR_001748630.1 | 58% | (many diffs) | |
| 8 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | NM_001006947.2 | 51.4% | 50.9% | (many diffs) |
| 9 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019050.2 | 38% | 37.5% | (many diffs) |
| 10 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_017019051.2 | 38% | 37.5% | (many diffs) |
| 11 | human | 23074 | UHRF1BP1L | UHRF1 binding protein 1 like | XM_011538054.3 | 36% | 35.5% | (many diffs) |
| 12 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XM_006514265.1 | 69.7% | 72.4% | (many diffs) |
| 13 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XM_017314128.1 | 59.7% | 62% | (many diffs) |
| 14 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | NM_029166.2 | 59.5% | 61.8% | (many diffs) |
| 15 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XM_006514264.2 | 56.8% | 58.6% | (many diffs) |
| 16 | mouse | 75089 | Uhrf1bp1l | UHRF1 (ICBP90) binding prot... | XR_380453.1 | 56.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3099
- ORF length:
- 3030
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggccgggatc atcaagnntc aaatcttgaa gcacctctcc agatttacca 121 aaaatttatc tcctgacaag ataaatctaa gtacccttaa aggagaaggt gaactgaaga 181 atttggagtt ggatgaagaa gtactccaga atatgttgga tttgccaaca tggcttgcta 241 tcaacaaagt tttttgtaat aaagcgtcca ttaggatccc atggacaaaa ctgaaaacac 301 atcccatctg tttgtccctg gataaagtaa taatggaaat gagtacatgt gaagaaccaa 361 gaagccctaa tggcccatca ccaattgcaa ctgcttcagg acaaagtgaa tacggctttg 421 ctgaaaaagt agttgaggga atttctgttt ctgtaaattc tatagtcatc agaattggag 481 caaaagcctt caatgcatca tttgaacttt ctcagcttcg gatctatagt gtaaatgcac 541 actgggaaca tggagatttg agatttactc gtattcagga tccacagaga ggagaggttt 601 tgacttttaa agaaataaat tggcagatga taagaataga ggcagatgcc acccaaagtt 661 cacatcttga aattatgtgt gctcctgttc gattaataac caaccaatca aaaatcagag 721 tcacacttaa aagaaggtta aaggactgca atgtcatagc aacaaagtta gttctaatat 781 tggatgactt attatgggtt ttgactgatt cccagttgaa agctatggta caatatgcaa 841 agtctcttag tgaagcaata gaaaaatcaa cagaacaaag gaagagtatg gctcctgaac 901 ctacacagag ctctacagta gtcgcatctg cccagcaagt gaagacaacg caaacttcaa 961 atgctcctga tgtaaatgat gcaattgtga aactattcaa tgattttgat gttaaggaaa 1021 cctcccatca tttagtgatt tctcatctag atctacacat atgtgatgac attcatgcta 1081 aagaaaaaga gtcaaacaga cgtattactg gaggggcaat gcaactctct tttacacagc 1141 taactataga ttattatcct tatcataaag caggagatag ttgtaatcat tggatgtatt 1201 ttagtgatgc aaccaaaaca aaaaatggat gggccaatga gttattgcat gaatttgagt 1261 gcaacgttga aatgcttaaa caggctgtga aggatcataa tgtaggttca cctcctaaat 1321 ccccaacaca tgcctctccc cagcacacac aaacagagaa ggactaccct ctgaaaggga 1381 catgcagaac accttcagta ttatctcaac aatcaaaagc taagctaatg tctagttctg 1441 ttgtggttag acttgcagat ttcaatatat accaggtctc tacagcggaa caatgtcgtt 1501 cttcccccaa aagcatgatt tgctgcaata aaaaatccct atatcttcca caagaaatgt 1561 cagctgtcta tatagaattc acagaatatt actatccaga tggaaaggat tttccaattc 1621 catctcccaa cctctatagc cagctgaatg cactacagtt tactgtggat gaaagaagca 1681 ttctatggtt aaatcaattt ctgttggatt taaaacagag tcttaatcag ttcatggctg 1741 tgtacaagtt gaatgacaat tcaaaatctg acgagcatgt tgatgttcga gttgatggct 1801 taatgctaaa gtttgtcatt ccttctgaag tgaaatctga agatcatcaa gatcagccac 1861 gtgcaatttc tattcagagt tctgaaatga ttgccacaaa tacaaggcac tgtccaaact 1921 gtcgacattc tgacctagaa gctttgtttc aagactttaa agattgtgat ttttttagta 1981 aaacatatac cagcttcccc aaatcttgtg acaattttaa tcttctacat ccaattttcc 2041 agagacatgc tcatgaacaa gataccaaaa tgcatgaaat ttataaagga aatattactc 2101 cccaattgaa taaaaacact cttaaaactt ctgctgccac ggatgtttgg gctgtgtact 2161 tttctcaatt ttggatagat tatgaaggga tgaaaagtgg aaaaggacgg ccaataagtt 2221 ttgtagactc attccctctt tccatttgga tttgtcaacc aacaagatat gcagagtcac 2281 aaaaagagcc gcagacttgt aatcaggtat ctctaaatac atcacaaagt gaatctagtg 2341 atctggctgg ccgattgaag cggaagaagc tcttgaagga gtattatagt acagagtctg 2401 agcctttgac aaatggtggt cagaagcctt cttcatcaga tacatttttc agattttccc 2461 cttcctcgtc agaggcagat attcatctcc tagttcatgt tcataaacat gtcagtatgc 2521 agattaatca ctaccagtat ctgcttctac ttttcctgca tgagtcactt atcctgcttt 2581 cagagaactt aaggaaagat gtagaagctg taactggcag tcctgctagt cagacatcca 2641 tttgtattgg aattttactt agaagtgcag aactggctct tttgctccat ccagtggatc 2701 aagcaaatac tcttaagtct cctgtttctg aaagtgtgag cccagtggta cctgattatt 2761 tgcctacaga aaatgggGAT TTTTTGTCTT CAAAAAGAAA ACAAATTAGT AGGGATATAA 2821 ATAGAATTAG AAGTGTAACT GTTAATCATA TGTCAGACAA CAGATCTATG AGTGTTGACC 2881 TTAGCCATAT CCCTTTAAAG GATCCTTTGC TTTTTAAATC AGCTAGTGAT ACAAATCTGC 2941 AAAAAGGCAT TTCTTTTATG GACTATTTAT CAGATAAACA TTTAGGGAAA ATAAGTGAAG 3001 ATGAAAGTAG TGGACTTGTT TACAAAAGTG GCTCAGGAGA AATTGGATCA GAAACAAGTG 3061 ACAAAAAGGA TTCATTTATA CAGATTCAAG TAGTATCTTT GCCAACTTTC TTGTACAAAG 3121 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 3181 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 3241 ACGAAACAGT TCCGGATAAC TTATAACCAC GCGTTAAGTC gacaatcaac ctctggatta 3301 caaaatttgt gaaagatt