Construct: ORF TRCN0000470307

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000598.1_s317c1
Derived from:
ccsbBroadEn_13423
DNA Barcode:
TCCCTAACAATTGTCGTAGCGTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NT5DC1 (221294)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470307
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 221294 NT5DC1 5'-nucleotidase domain cont... NM_152729.3 62.4% 62.4% 1_513del
2 human 221294 NT5DC1 5'-nucleotidase domain cont... XM_006715378.3 30.7% 30.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
918
ORF length:
852
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc agcttttaag gaaaactgtg gaatatattt tccagaaata aaaagagatc
121caggcagata tttacatagt tgtcctgaat ctgtgaaaaa atggcttcga cagctaaaga
181atgctgggaa aattcttctg ttaattacca gttctcacag tgattactgt agacttctct
241gcgaatatat tcttgggaat gattttacag acctttttga cattgtgatt acaaatgcat
301tgaagcctgg tttcttctcc cacttaccaa gtcagagacc tttccggaca ctcgagaatg
361atgaggagca ggaggcactg ccatctctgg ataaacctgg ctggtactcc caagggaacg
421ctgtccacct ctatgaactt ctgaagaaaa tgactggcaa accTGAACCC AAGGTTGTTT
481ATTTTGGTGA CAGCATGCAT TCAGATATTT TCCCAGCTCG TCACTATAGT AATTGGGAGA
541CAGTCCTCAT CCTGGAAGAA CTCAGAGGGG ATGAAGGCAC GAGGAGTCAG AGGCCTGAGG
601AGTCAGAGCC TCTAGAGAAG AAAGGAAAAT ATGAGGGACC AAAAGCAAAA CCTTTAAATA
661CTTCATCTAA AAAATGGGGC TCTTTTTTTA TTGATTCAGT TTTGGGACTG GAAAATACAG
721AAGACTCCTT GGTTTATACA TGGTCTTGTA AGAGAATCAG TACTTACAGC ACTATTGCAA
781TTCCAAGTAT TGAAGCAATC GCAGAATTAC CTCTGGACTA CAAATTTACA AGATTCTCTT
841CAAGCAATTC AAAAACAGCT GGCTACTATC CAAATCCTCC ACTGGTCTTA TCAAGTGATG
901AGACACTGAT ATCCAAATAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
961TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1021GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGATCCCTAA CAATTGTCGT
1081AGCGTCGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)