Construct: ORF TRCN0000470378
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007090.1_s317c1
- Derived from:
- ccsbBroadEn_05801
- DNA Barcode:
- GATCAGTGGTTCCATCATTCTCCT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ALDH3A1 (218)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470378
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_000691.5 | 99.7% | 67% | 400T>G;741T>A;949_950insC |
| 2 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_001135167.1 | 99.7% | 67% | 400T>G;741T>A;949_950insC |
| 3 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_001135168.1 | 99.7% | 67% | 400T>G;741T>A;949_950insC |
| 4 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | NM_001330150.2 | 83.6% | 51.7% | (many diffs) |
| 5 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_011523731.2 | 83.6% | 51.7% | (many diffs) |
| 6 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_005256522.1 | 72.2% | 33.4% | (many diffs) |
| 7 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_005256523.3 | 72.2% | 33.4% | (many diffs) |
| 8 | human | 218 | ALDH3A1 | aldehyde dehydrogenase 3 fa... | XM_005256524.3 | 72.2% | 33.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1140
- ORF length:
- 1074
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag caagatcagc gaggccgtga agcgcgcccg cgccgccttc agctcgggca 121 ggacccgtcc gctgcagttc cggatccagc agctggaggc gctgcagcgc ctgatccagg 181 agcaggagca ggagctggtg ggcgcgctgg ccgcagacct gcacaagaat gaatggaacg 241 cctactatga ggaggtggtg tacgtcctag aggagatcga gtacatgatc cagaagctcc 301 ctgagtgggc cgcggatgag cccgtggaga agacgcccca gactcagcag gacgagctct 361 acatccactc ggagccactg ggcgtggtcc tcgtcattgg cacctggaac taccccttca 421 acctcaccat ccagcccatg gtgggcgcca tcgctgcagg gaacgcagtg gtcctcaagc 481 cctcggagct gagtgagaac atggcgagcc tgctggctac catcatcccc cagtacctgg 541 acaaggatct gtacccagta atcaatgggg gtgtccctga gaccacggag ctgctcaagg 601 agaggttcga ccatatcctg tacacgggca gcacgggggt ggggaagatc atcatgacgg 661 ctgctgccaa gcacctgacc cctgtcacgc tggagctggg agggaagagt ccctgctacg 721 tggacaagaa ctgtgacctg gacgtggcct gccgacgcat cgcctggggg aaattcatga 781 acagtggcca gacctgcgtg gccccagact acatcctctg tgacccctcg atccagaacc 841 aaattgtgga gaagctcaag aagtcactga aagagttcta cggggaagat gctaagaaat 901 cccgggacta tggaagaatc attagtgccc ggcacttcca gagggtgatg ggcctgattg 961 agggccagaa ggtggcttat gggggcaccg ggGATGCCGC CACTCGCTAC ATAGCCCCCC 1021 ACCATCCTCA CGGACGTGGA CCCCCAGTCC CCGGTGATGC AAGAGGAGAT CTTCGGGCCT 1081 GTGCTGCCCA TCGTGTGCGT GCGCAGCCTG GAGGAGGCCA TCCAGTTCAT CAACCAGCGT 1141 GAGAAGCCCC TGGCCCTCTA CATGTTCTCC AGCAACGACA AGGTGATTAA GAAGATGATT 1201 GCAGAGACAT CCAGTGGTGG GGTGGCGGCC AACGATGTCA TCGTCCACAT CACCTTGCAC 1261 TCTCTGCCCT TCGGGGGCGT GGGGAACAGC GGCATGGGAT CCTACCATGG CAAGAAGAGC 1321 TTCGAGACTT TCTCTCACCG CCGCTCTTGC CTGGTGAGGC CTCTGATGAA TGATGAAGGC 1381 CTGAAGGTCA GATACCCCCC GAGCCCGGCC AAGATGACCC AGCACTGCCC AACTTTCTTG 1441 TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG 1501 TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT 1561 GGAAAGGACG AGATCAGTGG TTCCATCATT CTCCTACGCG TTAAGTCgac aatcaacctc 1621 tggattacaa aatttgtgaa agatt