Construct: ORF TRCN0000470592

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015176.1_s317c1
Derived from:
ccsbBroadEn_12831
DNA Barcode:
TAAGCCGGAGTGCAACAAAGGACT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC12A8 (84561)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470592
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84561 SLC12A8 solute carrier family 12 me... NM_001195483.1 43% 42.9% 1_1218del;1991G>A;1998T>C
2 human 84561 SLC12A8 solute carrier family 12 me... NM_024628.5 43% 42.9% 1_1218del;1991G>A;1998T>C
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
990
ORF length:
924
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtg ttcctgcagc ctgaccccgg tgcctgagcc ggtgctcagg gagggcgcag
121aaggcctcca ctgctctgag cacctgctct tagagaaagc tcccagttac ggctctgagg
181gacctgccca aagagtcttg gagggcacgc tactggaatt caccaaggac atggatcagc
241tcctccagct aaccaggaag cttgagagta gccagcccag gcaaggagag ggtaacagga
301ccccagaaag tcagaagagg aaaagcaaga aggccaccaa gcagacccta caagatagct
361tcctcttgga cctcaaatcc cctccttctt tccctgtcga gatctctgac aggttgcccg
421ctgcctcctg ggaggggcag gagtcctgct ggaacaagca gacttccaag agcgaaggga
481ctcagcctga gggaacatat ggagagcaac ttgttcctga gctgtgcaac caatcagagt
541ccagtggaga agatttcttc ctGAAGTCCA GGCTCCAAGA ACAAGATGTC TGGAGAAGAT
601CCACTTCTTT CTATACCCAC ATGTGCAACC CCTGGGTCTC CCTGTTGGGG GCTGTTGGGT
661CCCTTCTCAT CATGTTTGTG ATACAGTGGG TGTATACCCT GGTTAACATG GGTGTTGCTG
721CCATCGTGTA TTTCTACATT GGCCGGGCCA GTCCAGGGCT TCACCTTGGA TCAGCCTCCA
781ACTTCAGCTT TTTCCGGTGG ATGAGGTCTC TCTTGCTCCC CTCCTGCAGG AGCTTGCAGT
841CCCCCCAGGA GCAGATCATC TTGGCGCCGT CCCTGGCTAA GGTTGACATG GAGATGACTC
901AGCTCACCCA GGAGAATGCA GACTTCGCCA CTCGGGATCG CTACCACCAC TCCTCCCTCG
961TGAACCGGGA GCAGCTGATG CCTCACTACT ACCCAACTTT CTTGTACAAA GTGGTTGATA
1021TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1081CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATAAGC
1141CGGAGTGCAA CAAAGGACTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1201tgaaagatt

Download FASTA (ORF) (Full)