Construct: ORF TRCN0000470836

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019048.3_s317c1
Derived from:
ccsbBroadEn_14845
DNA Barcode:
TCAGTGGTTTCCGGGGAGTTCTCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SRC (6714)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470836
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6714 SRC SRC proto-oncogene, non-rec... NM_005417.4 100% 100%
2 human 6714 SRC SRC proto-oncogene, non-rec... NM_198291.2 100% 100%
3 human 6714 SRC SRC proto-oncogene, non-rec... XM_011529013.2 99.9% 100% 1218G>C
4 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028024.1 98.8% 98.8% 351_368del;1236G>C
5 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028025.1 98.8% 98.8% 351_368del;1236G>C
6 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028026.1 98.8% 98.8% 351_368del;1236G>C
7 human 6714 SRC SRC proto-oncogene, non-rec... XM_017028027.2 98.8% 98.8% 351_368del;1236G>C
8 mouse 20779 Src Rous sarcoma oncogene NM_001025395.2 90% 98.8% (many diffs)
9 mouse 20779 Src Rous sarcoma oncogene NM_009271.3 89% 97.7% (many diffs)
10 mouse 20779 Src Rous sarcoma oncogene XM_006499063.3 87.3% 95.8% (many diffs)
11 mouse 20779 Src Rous sarcoma oncogene XM_006499065.3 87.3% 95.8% (many diffs)
12 mouse 20779 Src Rous sarcoma oncogene XM_006499066.2 87.3% 95.8% (many diffs)
13 mouse 20779 Src Rous sarcoma oncogene XM_011239402.2 87.3% 95.8% (many diffs)
14 mouse 20779 Src Rous sarcoma oncogene XM_011239403.2 87.3% 95.8% (many diffs)
15 mouse 20779 Src Rous sarcoma oncogene XM_011239404.1 87.3% 95.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1677
ORF length:
1608
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gggtagcaac aagagcaagc ccaaggatgc cagccagcgg cgccgcagcc
121tggagcccgc cgagaacgtg cacggcgctg gcgggggcgc tttccccgcc tcgcagaccc
181ccagcaagcc agcctcggcc gacggccacc gcggccccag cgcggccttc gcccccgcgg
241ccgccgagcc caagctgttc ggaggcttca actcctcgga caccgtcacc tccccgcaga
301gggcgggccc gctggccggt ggagtgacca cctttgtggc cctctatgac tatgagtcta
361ggacggagac agacctgtcc ttcaagaaag gcgagcggct ccagattgtc aacaacacag
421agggagactg gtggctggcc cactcgctca gcacaggaca gacaggctac atccccagca
481actacgtggc gccctccgac tccatccagg ctgaggagtg gtattttggc aagatcacca
541gacgggagtc agagcggtta ctgctcaatg cagagaaccc gagagggacc ttcctcgtgc
601gagaaagtga gaccacgaaa ggtgcctact gcctctcagt gtctgacttc gacaacgcca
661agggcctcaa cgtgaagcac tacaagatcc gcaagctgga cagcggcggc ttctacatca
721cctcccgcac ccagttcaac agcctgcagc agctggtggc ctactactcc aaacacgccg
781atggcctgtg ccaccgcctc accaccgtgt gccccacgtc caagccgcag actcagggcc
841tggccaagga tgcctgggag atccctcggg agtcgctgcg gctggaggtc aagctgggcc
901agggctgctt tggcgaggtg tggatgggga cctggaacgg taccaccagg gtggccatca
961aaaccctgaa gcctggcacg atgtctccag aggccttcct gcaggaggcc caggtcatga
1021agaagctgag gcatgagaag ctggtgcagt tgtatgctgt ggtttcagag gagcccattt
1081acatcgtcac ggagtacatg agcaagggga gtttgctgga ctttctcaag ggggagacag
1141gcaagtacct gcggctgcct cagctggtgg acatggctgc tcagatcgcc tcaggcatgg
1201cgtacgtgga gcggatgaac tacgtccacc gggaccttcg tgcagccaac atcctggtgg
1261gagagaacct ggtgtgcaaa gtggccgact ttgggctggc tcggctcatt GAAGACAATG
1321AGTACACGGC GCGGCAAGGT GCCAAATTCC CCATCAAGTG GACGGCTCCA GAAGCTGCCC
1381TCTATGGCCG CTTCACCATC AAGTCGGACG TGTGGTCCTT CGGGATCCTG CTGACTGAGC
1441TCACCACAAA GGGACGGGTG CCCTACCCTG GGATGGTGAA CCGCGAGGTG CTGGACCAGG
1501TGGAGCGGGG CTACCGGATG CCCTGCCCGC CGGAGTGTCC CGAGTCCCTG CACGACCTCA
1561TGTGCCAGTG CTGGCGGAAG GAGCCTGAGG AGCGGCCCAC CTTCGAGTAC CTGCAGGCCT
1621TCCTGGAGGA CTACTTCACG TCCACCGAGC CCCAGTACCA GCCCGGGGAG AACCTCTACC
1681CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1741TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1801ATATATCTTG TGGAAAGGAC GATCAGTGGT TTCCGGGGAG TTCTCGACGC GTTAAGTCga
1861caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)

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