Construct: ORF TRCN0000471026
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007645.1_s317c1
- Derived from:
- ccsbBroadEn_05517
- DNA Barcode:
- CTGTGATACCCGGAGTTTCGTACA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LNP1 (348801)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471026
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 348801 | LNP1 | leukemia NUP98 fusion partn... | NM_001085451.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 603
- ORF length:
- 534
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggagcacaaa gatgatgatg atgatgatgt gtcttttgcc aaatggatga 121 gcagcttctg gGGCCACAGC TGGAGAGAGG AGGATCAGAG AGGACTCCGG GAACGCCACC 181 GACTGCAAGC CACCAGTCAC AGGAAAACCT CCCTGCCCTG CCCACTTCCT GTGCTTCCCA 241 GAATTCCATC ATCTGACTGC CATCCTAGAA GGCATTCTCA TGAGGACCAA GAATTTCGAT 301 GCCGTAGCCA CGTACGGGAT TACAGAAAAT ACTCAGAGGA TGGGTCATTC AAGGAGCCAC 361 TGGAATCAAA AGGAAGATCC CATTCCAAAA TTGAGAAATT TTCAGAGTCC TTTGAACGGC 421 AACTGTGCTT TAGAACCAAG CGTTCTGCCT CTTTGGGACC TGAAAGCAGA AAGGAGAGAA 481 ATGAAAGAGA ATGCCTGAGG ATGGAGATAA AATCCCGAAA GAAAGTAGAG GAAGAAAGGA 541 GCTCTAGGAA AGAAGAGCAT GGAGAAGCAC ACATGGCTCC CCTGTTTGAA AAAGGGCCTG 601 AATTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 661 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 721 GGCTTTATAT ATCTTGTGGA AAGGACGACT GTGATACCCG GAGTTTCGTA CAACGCGTTA 781 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt