Construct: ORF TRCN0000471138

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005914.2_s317c1
Derived from:
ccsbBroadEn_06998
DNA Barcode:
AGGTCATAATAACTGTTCTGGTAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SRPK1 (6732)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471138
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6732 SRPK1 SRSF protein kinase 1 NM_003137.5 99.9% 99.8% 629T>C
2 human 6732 SRPK1 SRSF protein kinase 1 NR_034069.1 44.5% (many diffs)
3 mouse 20815 Srpk1 serine/arginine-rich protei... NM_016795.4 88.2% 91.4% (many diffs)
4 mouse 20815 Srpk1 serine/arginine-rich protei... XM_006523958.3 76.7% 78.2% (many diffs)
5 mouse 20815 Srpk1 serine/arginine-rich protei... XM_011246337.2 74.8% 75.3% (many diffs)
6 mouse 20815 Srpk1 serine/arginine-rich protei... XR_385308.3 57.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2031
ORF length:
1965
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gcggaaagtg cttgcgctcc aggcccgaaa gaaaaggacc aaggccaaga
121aggacaaagc ccaaaggaaa tctgaaactc agcaccgagg ctctgctccc cactctgaga
181gtgatctacc agagcaggaa gaggagattc tgggatctga tgatgatgag caagaagatc
241ctaatgatta ttgtaaagga ggttatcatc ttgtgaaaat tggagatcta ttcaatggga
301gataccatgt gatccgaaag ttaggctggg gacacttttc aacagtatgg ttatcatggg
361atattcaggg gaagaaattt gtggcaatga aagtagttaa aagtgctgaa cattacactg
421aaacagcact agatgaaatc cggttgctga agtcagttcg caattcagac cctaatgatc
481caaatagaga aatggttgtt caactactag atgactttaa aatatcagga gttaatggaa
541cacatatctg catggtattt gaagttttgg ggcatcatct gctcaagtgg atcatcaaat
601ccaattatca ggggcttcca ctgccttgtg tcaaaaaaat tattcagcaa gtgttacagg
661gtcttgatta tttacatacc aagtgccgta tcacccacac tgacattaaa ccagagaaca
721tcttattgtc agtgaatgag cagtacattc ggaggctggc tgcagaagca acagaatggc
781agcgatctgg agctcctccg ccttccggat ctgcagtcag tactgctccc cagcctaaac
841cagctgacaa aatgtcaaag aataagaaga agaaattgaa gaagaagcag aagcgccagg
901cagaattact agagaagcga atgcaggaaa ttgaggaaat ggagaaagag tcgggccctg
961ggcaaaaaag accaaacaag caagaagaat cagagagtcc tgttgaaaga cccttgaaag
1021agaacccacc taataaaatg acccaagaaa aacttgaaga gtcaagtacc attggccagg
1081atcaaacgct tatggaacgt gatacagagg gtggtgcagc agaaattaat tgcaatggag
1141tgattgaagt cattaattat actcagaaca gtaataatga aacattgaga cataaagagg
1201atctacataa tgctaatgac tgtgatgtcc aaaatttgaa tcaggaatct agtttcctaa
1261gctcccaaaa tggagacagc agcacatctc aagaaacaga ctcttgtaca cctataacat
1321ctgaggtgtc agacaccatg gtgtgccagt cttcctcaac tgtaggtcag tcattcagtg
1381aacaacacat tagccaactt caagaaagca ttcgggcaga gataccctgt gaagatgaac
1441aagagcaaga acataacgga ccactggaca acaaaggaaa atccacggct ggaaattttc
1501ttgttaatcc ccttgagcca aaaaatgcag aaaagctcaa ggtgaagatt gctgaccttg
1561gaaatgcttg ttgggtgcac aaacatttca ctgaagatat tcaaacaagg caatatcgtt
1621ccttggaagt tctaaTCGGA TCTGGCTATA ATACCCCTGC TGACATTTGG AGCACGGCAT
1681GCATGGCCTT TGAACTGGCC ACAGGTGACT ATTTGTTTGA ACCTCATTCA GGGGAAGAGT
1741ACACTCGAGA TGAAGATCAC ATTGCATTGA TCATAGAACT TCTGGGGAAG GTGCCTCGCA
1801AGCTCATTGT GGCAGGAAAA TATTCCAAGG AATTTTTCAC CAAAAAAGGT GACCTGAAAC
1861ATATCACGAA GCTGAAACCT TGGGGCCTTT TTGAGGTTCT AGTGGAGAAG TATGAGTGGT
1921CGCAGGAAGA GGCAGCTGGC TTCACAGATT TCTTACTGCC CATGTTGGAG CTGATCCCTG
1981AGAAGAGAGC CACTGCCGCC GAGTGTCTCC GGCACCCTTG GCTTAACTCC TACCCAACTT
2041ACTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
2101CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
2161CTTGTGGAAA GGACGAAGGT CATAATAACT GTTCTGGTAC ACGCGTTAAG TCgacaatca
2221acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)