Construct: ORF TRCN0000471146

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006595.1_s317c1
Derived from:
ccsbBroadEn_10733
DNA Barcode:
TGTAAACCTGCTCGCCGACGTCCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHRNA1 (1134)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471146
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1134 CHRNA1 cholinergic receptor nicoti... NM_000079.4 57.6% 55.7% (many diffs)
2 human 1134 CHRNA1 cholinergic receptor nicoti... NM_001039523.3 54.6% 52.9% (many diffs)
3 human 1134 CHRNA1 cholinergic receptor nicoti... XM_017003257.1 54.1% 52.8% (many diffs)
4 human 1134 CHRNA1 cholinergic receptor nicoti... XM_017003256.1 51.4% 50.2% (many diffs)
5 mouse 11435 Chrna1 cholinergic receptor, nicot... NM_007389.5 51.7% 52.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
873
ORF length:
807
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gccctggcct ctcctcctgc tctttagcct ttgctcagct ggcctcgtcc
121tgggctccga acatgagacc cgtctggtgg caaagctatt taaagactac agcagcgtgg
181tgcggccagt ggaagaccac cgccaggtcg tggaggtcac cgtgggcctg cagctgatac
241agctcatcaa tgtggatgaa gtaaatcaga tcgtgacaac caatgtgcgt ctgaaacagc
301aatgggtgga ttacaaccta aaatggaatc cagatgacta tggcggtgtg aaaaaaattc
361acattccttc agaaaagatc tggcgcccag accttgttct ctataacaat gcagatggtg
421actttgctat tgtcaagttc accaaagtgc tccTGCAGTA CACTGGCCAC ATCACGTGGA
481CACCTCCAGC CATCTTTAAA AGCTACTGTG AGATCATCGT CACCCACTTT CCCTTTGATG
541AACAGAACTG CAGCATGAAG CTGGGCACCT GGACCTACGA CGGCTCTGTC GTGGCCATCA
601ACCCGGAAAG CGACCAGCCA GACCTGAGCA ACTTCATGGA GAGCGGGGAG TGGGTGATCA
661AGGAGTCCCG GGGCTGGAAG CACTCCGTGA CCTATTCCTG CTGCCCCGAC ACCCCCTACC
721TGGACATCAC CTACCACTTC GTCATGCAGC GCCTGCCCCT CTACTTCATC GTCAACGTCA
781TCATCCCCTG CCTGCTCTTC TCCTTCTTAA CTGGCCTGGT ATTCTACCTG CCCACAGACT
841CAGGTGGGTG TGGTTGCCAT GACTGCTGCT GCTGCCCAAC TTTCTTGTAC AAAGTGGTTG
901ATATCGGTAA GCCTATCCCT AACCCTCTCC TCGGTCTCGA TTCTACGTAG TAATGAACTA
961GTCCGTAACT TGAAAGTATT TCGATTTCTT GGCTTTATAT ATCTTGTGGA AAGGACGATG
1021TAAACCTGCT CGCCGACGTC CGACGCGTTA AGTCgacaat caacctctgg attacaaaat
1081ttgtgaaaga tt

Download FASTA (ORF) (Full)