Construct: ORF TRCN0000471272

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007183.1_s317c1
Derived from:
ccsbBroadEn_14283
DNA Barcode:
TTATTCATGACGGTGTGCATGCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAAP100 (80233)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471272
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80233 FAAP100 FA core complex associated ... XM_006722112.3 31.6% 31.5% (many diffs)
2 human 80233 FAAP100 FA core complex associated ... XM_017025162.1 31.6% 31.5% (many diffs)
3 human 80233 FAAP100 FA core complex associated ... XM_017025163.1 31.6% 31.5% (many diffs)
4 human 80233 FAAP100 FA core complex associated ... XM_006722111.2 28.1% 21.1% (many diffs)
5 human 80233 FAAP100 FA core complex associated ... NM_025161.6 26.2% 26.1% (many diffs)
6 human 80233 FAAP100 FA core complex associated ... XR_001752653.1 18.3% (many diffs)
7 human 80233 FAAP100 FA core complex associated ... NR_033338.2 18.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
765
ORF length:
699
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct gcagtgtctg cgcttccctg gcctggccct gccacacaca cgggccccct
121ccccactcgg ccccacccga gaccctgtgg ccacttttct ggaaacttgt cgggagcctg
181gcagccagcc agcaggaccc gcctccctgc gggccgagta cctgccccca tctgtggctt
241ccatcaaggt gtcggcggag ctgctcagag ctgccttgaa ggacggccac tcaggcgtgc
301ccctgtgctg tgccaccctg cagtggctcc ttgctgagaa tgcTGCTGTG GACGTCGTGA
361GGGCCCGAGC ACTATCTTCC ATCCAGGGAG TGGCCCCTGA TGGCGCCAAC GTTCACCTCA
421TCGTCCGAGA GGTGGCCATG ACCGACCTGT GCCCAGCAGG GCCCATCCAG GCCGTGGAGA
481TTCAAGTGGA AAGCTCCTCT CTGGCCGACA TTTGCAGGGC GCACCATGCC GTTGTCGGGC
541GCATGCAGAC GATGGTGACA GAGCAGGCCG CCCAGGGCTC CAGCGCTCCT GATCTCCGTG
601TGCAGTACCT CCGCCAGATC CACGCCAACC ACGAGACACT GCTGCGGGAG GTGCAGACCC
661TGCGCGACCG GCTCTGCACG GAGGATGAGG CCAGCTCCTG TGCCACCGCC CAGAGGCTGC
721TACAGGTGTA CCGGCAGCTG CGCCACCCCA GTCTCATCCT GCAGTGCCCA ACTTTCTTGT
781ACAAAGTGGT TGATATCGGT AAGCCTATCC CTAACCCTCT CCTCGGTCTC GATTCTACGT
841AGTAATGAAC TAGTCCGTAA CTTGAAAGTA TTTCGATTTC TTGGCTTTAT ATATCTTGTG
901GAAAGGACGA TTATTCATGA CGGTGTGCAT GCCTACGCGT TAAGTCgaca atcaacctct
961ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)