Construct: ORF TRCN0000471333

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015369.1_s317c1
Derived from:
ccsbBroadEn_08241
DNA Barcode:
TTGCCTCAACAACTTCTACTGGGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HAO2 (51179)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471333
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51179 HAO2 hydroxyacid oxidase 2 NM_016527.4 99.9% 100% 16T>C
2 human 51179 HAO2 hydroxyacid oxidase 2 NM_001005783.3 96.3% 96.4% 1_39del;55T>C
3 human 51179 HAO2 hydroxyacid oxidase 2 XM_024447493.1 77.1% 77.1% 1_39del;55T>C;600_601ins210
4 human 51179 HAO2 hydroxyacid oxidase 2 XM_024447485.1 76% 75.8% 16T>C;928_929ins70;984_1221del
5 human 51179 HAO2 hydroxyacid oxidase 2 XM_017001421.1 73.8% 73.6% (many diffs)
6 human 51179 HAO2 hydroxyacid oxidase 2 XM_024447484.1 73.8% 73.6% (many diffs)
7 human 51179 HAO2 hydroxyacid oxidase 2 XM_011541558.2 70.2% 69.9% (many diffs)
8 human 51179 HAO2 hydroxyacid oxidase 2 XM_024447495.1 70.2% 70.3% (many diffs)
9 human 51179 HAO2 hydroxyacid oxidase 2 XM_024447486.1 68.1% 67.8% (many diffs)
10 human 51179 HAO2 hydroxyacid oxidase 2 XM_024447492.1 58% 57.4% (many diffs)
11 human 51179 HAO2 hydroxyacid oxidase 2 XM_011541561.2 53.3% 52.1% (many diffs)
12 human 51179 HAO2 hydroxyacid oxidase 2 XM_024447498.1 46.4% 45.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1119
ORF length:
1053
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtc cttggtgtgt ctgacagact ttcaggccca tgcgcgagag cagctgtcta
121agtcaactcg ggattttatt gaaggtggag cagatgacag catcacgcgg gatgacaaca
181ttgcagcatt taaaagaatt cgcctccgtc cgcggtacct gagagatgtg tctgaggtgg
241acaccagaac cacaatccaa ggggaggaga tcagtgcccc tatttgtatc gcacccacag
301ggttccactg ccttgtctgg cctgatgggg aaatgagcac agcaagagct gcccaagcgg
361ctggtatctg ctacatcacc agcacatttg ccagctgtag ccttgaagac attgtcattg
421cagctcccga aggcctccga tggttccaac tctatgtgca tccagacctg cagctgaaca
481aacagttgat ccagagggta gaatccctag gtttcaaagc tttggtaata actttggata
541cacctgtatg tggcaacagg cgacatgaca ttcgaaacca gttgaggagg aacttaacac
601taacagatct tcaatcacct aaaaagggaa atgcaatacc ttatttccag atgactccta
661tcagcacttc tctctgctgg aatgatctct cctggtttca gagcataact cgattgccca
721tcatccTGAA AGGGATTTTG ACAAAAGAGG ATGCAGAGTT AGCTGTGAAG CACAATGTCC
781AGGGTATCAT TGTTTCCAAC CATGGTGGGA GGCAGCTTGA TGAGGTTCTT GCTTCAATTG
841ATGCTTTGAC AGAAGTGGTG GCTGCTGTAA AGGGGAAAAT TGAAGTCTAC CTGGATGGCG
901GGGTCCGAAC TGGCAATGAT GTGCTGAAGG CTCTGGCCCT TGGAGCTAAG TGCATTTTTC
961TTGGGAGACC AATCCTATGG GGCCTTGCCT GCAAGGGTGA ACATGGTGTT AAGGAAGTTT
1021TGAACATTTT AACAAATGAG TTCCACACTT CCATGGCCCT TACAGGCTGC CGGTCGGTCG
1081CTGAGATCAA TCGAAACTTG GTCCAGTTTT CCAGGCTGTA CCCAACTTTC TTGTACAAAG
1141TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1201GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1261ACGATTGCCT CAACAACTTC TACTGGGAAC GCGTTAAGTC gacaatcaac ctctggatta
1321caaaatttgt gaaagatt

Download FASTA (ORF) (Full)