Construct: ORF TRCN0000471402
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001465.1_s317c1
- Derived from:
- ccsbBroadEn_10615
- DNA Barcode:
- TGACAGTGGCCAGGCGACCCGCCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LINC01139 (339535)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471402
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 339535 | LINC01139 | long intergenic non-protein... | NR_015407.1 | 26.8% | 1_317del;570C>T;732_1540del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 483
- ORF length:
- 414
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcttccccaa aacagtgccc CCTGTCATCA GGAAGCAGTT AACACTGGTC 121 TTCATTCTTA CGCTTATCCT TATTCTAACA GCAGTTATAT GTACTTCTTT AGACGGGGGA 181 ATAAGACAGC CAGGTGGGAG GGGGTCTCTG GAAAACTCCA TCTGGCCTGT GCACTAGGGT 241 GGAACCTCAG GAAGTTGATG ACATTTGTAG CTGGGAGCAG CCTGGCCCCT CCTCTTCCTG 301 TGTGGAACCT GAAATTCCAC TGGCTTGGCA GGAAGCGCTC TAGCAGGGAC TCCGGCTTTG 361 CAGAGCATCC CTGTTTCCCC GTTTTTCCCT TTTCACCCAA TAAAACCCTG CTTCACTCAC 421 CCTTCAAACC ATCTGCAAGC CTAAATTTTT GTGGCTGTGG GACGGACAAA GATGCCTTTA 481 GCTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC 541 TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT 601 GGCTTTATAT ATCTTGTGGA AAGGACGATG ACAGTGGCCA GGCGACCCGC CGACGCGTTA 661 AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt