Construct: ORF TRCN0000471499

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002515.1_s317c1
Derived from:
ccsbBroadEn_08093
DNA Barcode:
CAATAATTTAATCTCGTCGAGATC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DCPS (28960)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471499
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 28960 DCPS decapping enzyme, scavenger NM_014026.6 99.7% 99.7% 218G>A;315G>A;480T>C
2 human 28960 DCPS decapping enzyme, scavenger NM_001350236.2 97.6% 97.6% (many diffs)
3 mouse 69305 Dcps decapping enzyme, scavenger NM_027030.2 85.6% 88.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1077
ORF length:
1011
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggacgcagct cctcaactag gcaagaggaa gcgcgaattg gacgtggagg
121aggcccacgc cgccagcaca gaggaaaagg aggcaggagt tggaaatggt acctgtgctc
181ctgtccgctt accgttctcc ggcttcagac tgcagaaggt gctgagggag tctgcgcggg
241acaaaatcat tttcctacac gggaaggtga atgaggcctc tgaggatggg gatggagagg
301atgccgttgt gatcctggag aagacgccat ttcaggtgga acaggtggct cagctcctga
361cgggcagccc tgagctccaa ttgcagttct ccaatgatat ctacagcacc tatcacttgt
421tccctccaag acaactgaat gatgtaaaga cgaccgtggt ttaccctgcc acagagaaac
481acctgcagaa gtacctgcgc caggacctcc gcctgatccg agagacggga gatgactaca
541ggaacattac tttaccccac ctggagtccc agagcctcag catccagtgg gtgtataaca
601ttctcgacaa gaaggctgaa gcggaccgga ttgttttcga gaacccagat ccctctgatg
661gttttgtcct catccctgac ctcaagtgga accaacagca gctcgatgac ttgtacttga
721tcgccatctg ccatcgccgg ggcatcagat cccTACGCGA CCTTACTCCG GAGCACTTGC
781CGCTGCTCAG GAACATCCTC CACCAGGGGC AGGAGGCCAT CCTGCAGCGC TACCGGATGA
841AGGGAGACCA TCTGCGAGTA TACCTGCACT ACCTGCCCTC CTACTACCAC CTGCATGTGC
901ACTTCACCGC CCTGGGCTTC GAGGCCCCCG GCTCAGGCGT GGAGCGGGCC CACCTGCTGG
961CTGAGGTGAT CGAGAACTTG GAGTGTGACC CTAGGCACTA CCAGCAGCGC ACGCTCACCT
1021TCGCCCTCAG GGCTGACGAC CCCCTGCTCA AGCTCTTGCA GGAGGCTCAG CAAAGCTGCC
1081CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1141TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1201ATATATCTTG TGGAAAGGAC GACAATAATT TAATCTCGTC GAGATCACGC GTTAAGTCga
1261caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)