Transcript: Human NM_014026.6

Homo sapiens decapping enzyme, scavenger (DCPS), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
DCPS (28960)
Length:
5427
CDS:
22..1035

Additional Resources:

NCBI RefSeq record:
NM_014026.6
NBCI Gene record:
DCPS (28960)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014026.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000005571 GCAGTTCTCCAATGATATCTA pLKO.1 339 CDS 100% 5.625 7.875 N DCPS n/a
2 TRCN0000335921 GCAGTTCTCCAATGATATCTA pLKO_005 339 CDS 100% 5.625 7.875 N DCPS n/a
3 TRCN0000005570 GCTCGATGACTTGTACTTGAT pLKO.1 657 CDS 100% 4.950 6.930 N DCPS n/a
4 TRCN0000335837 GCTCGATGACTTGTACTTGAT pLKO_005 657 CDS 100% 4.950 6.930 N DCPS n/a
5 TRCN0000005572 CAGCATCCAGTGGGTGTATAA pLKO.1 534 CDS 100% 13.200 9.240 N DCPS n/a
6 TRCN0000335924 GGGAGACCATCTGCGAGTATA pLKO_005 798 CDS 100% 13.200 9.240 N DCPS n/a
7 TRCN0000304792 GTTGCAGTTCTCCAATGATAT pLKO_005 336 CDS 100% 13.200 9.240 N Dcps n/a
8 TRCN0000005573 CAAGACAACTGAATGATGTAA pLKO.1 383 CDS 100% 5.625 3.938 N DCPS n/a
9 TRCN0000005569 CAGGCAGAAGAGCACAGATGT pLKO.1 1043 3UTR 100% 4.950 3.465 N DCPS n/a
10 TRCN0000335923 CAGGCAGAAGAGCACAGATGT pLKO_005 1043 3UTR 100% 4.950 3.465 N DCPS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014026.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08093 pDONR223 100% 99.7% 99.7% None 218G>A;315G>A;480T>C n/a
2 ccsbBroad304_08093 pLX_304 0% 99.7% 99.7% V5 218G>A;315G>A;480T>C n/a
3 TRCN0000471499 CAATAATTTAATCTCGTCGAGATC pLX_317 32.3% 99.7% 99.7% V5 218G>A;315G>A;480T>C n/a
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