Construct: ORF TRCN0000471600

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010552.1_s317c1
Derived from:
ccsbBroadEn_04135
DNA Barcode:
AGCACACCGGCTGATAAAATGCAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KDM8 (79831)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471600
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79831 KDM8 lysine demethylase 8 NM_024773.3 100% 100%
2 human 79831 KDM8 lysine demethylase 8 XM_017023676.1 92.5% 92.5% 990_991ins93
3 human 79831 KDM8 lysine demethylase 8 NM_001145348.1 91.6% 91.6% 1_114del
4 human 79831 KDM8 lysine demethylase 8 XM_017023677.2 47.8% 47.8% 0_1ins651
5 human 79831 KDM8 lysine demethylase 8 XM_017023678.2 47.8% 47.8% 0_1ins651
6 human 79831 KDM8 lysine demethylase 8 XM_017023679.2 47.8% 47.8% 0_1ins651
7 human 79831 KDM8 lysine demethylase 8 XR_001751987.1 41.4% 1_31del;959_960ins64;1216_2793del
8 human 79831 KDM8 lysine demethylase 8 XM_017023680.1 39.4% 39.4% 0_1ins756
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1314
ORF length:
1248
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tggagacacc cactgccccg cagagcccct ggccagagaa ggcactttat
121gggaggccct cagggcgctc ctgccgcaca gtaaagaaga cctgaagttg gacctcgggg
181agaaagtgga gaggagcgtg gtgacattgt tgcagcgagc cactgagctc ttctacgagg
241gcaggaggga cgagtgtctg cagagcagcg aggtgatcct ggactactcc tgggagaagc
301tcaacacggg cacatggcag gacgtagaca aagactggcg ccgggtctac gccatcggct
361gcctcctgaa agccctgtgt ctgtgccagg cacctgagga tgccaacact gtggccgcag
421ccctgcgggt ctgtgacatg ggcctgctga tgggggcagc catcctgggg gacatccttc
481ttaaagtcgc tgccatcctc cagacacacc tccctggaaa gaggcctgcc cgtggctccc
541tcccagagca accctgcaca aagaaagcaa gggcggacca tggtttgatt ccagatgtga
601agttagaaaa aacagtcccc cggctgcacc gtccgtccct ccagcatttc agggagcagt
661ttttggttcc agggaggccc gtgatcctga aaggcgtggc tgaccactgg ccgtgcatgc
721agaagtggag tttggagtat atccaggaga tcgctggctg ccgaactgtc ccagtggaag
781ttggttcgag gtacacagat gaggaatggt cccagaccct catgacggtc aacgagttca
841tcagcaaata catcgtgaat gagccaaggg acgtcgggta ccttgctcag caccagctct
901ttgaccagat cccggagttg aagcaggaca tcagcatccc cgactactgc agcctgggcg
961atggggagga ggaggaaatc accatcaatg cctggtttgg TCCCCAGGGA ACCATCTCCC
1021CACTACATCA GGATCCCCAG CAAAACTTCC TAGTGCAGGT GATGGGGAGG AAGTACATCC
1081GGCTGTATTC CCCGCAGGAG TCAGGGGCTC TGTACCCTCA TGACACGCAC CTTCTCCATA
1141ACACGAGCCA GGTTGACGTG GAGAATCCCG ACCTGGAAAA GTTCCCCAAG TTTGCCAAGG
1201CCCCATTCCT GTCCTGCATC CTGTCTCCTG GAGAGATCCT GTTCATCCCG GTGAAATACT
1261GGCATTACGT GCGGGCTCTG GATTTGAGCT TCTCGGTCAG CTTCTGGTGG TCGTACCCAA
1321CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1381ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
1441TATCTTGTGG AAAGGACGAA GCACACCGGC TGATAAAATG CAGACGCGTT AAGTCgacaa
1501tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)