Construct: ORF TRCN0000471608

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016180.1_s317c1
Derived from:
ccsbBroadEn_06381
DNA Barcode:
TGTAATATTACCATGCAATTGTTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HMGB1 (3146)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471608
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3146 HMGB1 high mobility group box 1 NM_001313892.1 99.6% 100% 195A>G;630A>G
2 human 3146 HMGB1 high mobility group box 1 NM_001313893.1 99.6% 100% 195A>G;630A>G
3 human 3146 HMGB1 high mobility group box 1 NM_001370340.1 99.5% 100% 195A>G;465T>C;630A>G
4 human 3146 HMGB1 high mobility group box 1 NM_001370341.1 99.5% 100% 195A>G;465T>C;630A>G
5 human 3146 HMGB1 high mobility group box 1 NM_002128.7 99.5% 100% 195A>G;465T>C;630A>G
6 human 3146 HMGB1 high mobility group box 1 XM_024449341.1 99.5% 100% 195A>G;465T>C;630A>G
7 human 3146 HMGB1 high mobility group box 1 NM_001363661.1 73% 73% (many diffs)
8 human 3146 HMGB1 high mobility group box 1 NM_001370339.1 73% 73% (many diffs)
9 human 6672 SP100 SP100 nuclear antigen NM_003113.4 20.7% 18.2% (many diffs)
10 mouse 100862258 Gm21596 predicted gene, 21596 XM_003945339.3 91.6% 99% (many diffs)
11 mouse 15289 Hmgb1 high mobility group box 1 NM_001313894.1 91.4% 99% (many diffs)
12 mouse 15289 Hmgb1 high mobility group box 1 NM_010439.4 91.4% 99% (many diffs)
13 mouse 382421 Gm5176 predicted gene 5176; high m... NR_033603.1 72.6% (many diffs)
14 mouse 628431 Hmgb1-rs17 high mobility group box 1, ... NR_033589.1 37.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
711
ORF length:
645
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg caaaggagat cctaagaagc cgagaggcaa aatgtcatca tatgcatttt
121ttgtgcaaac ttgtcgggag gagcataaga agaagcaccc agatgcttca gtcaacttct
181cagagttttc taagaagtgc tcagagaggt ggaagaccat gtctgctaaa gagaaaggaa
241aatttgaaga tatggcaaag gcggacaagg cccgttatga aagagaaatg aaaacctata
301tccctcccaa aggggagaca aaaaagaagt tcaaggatcc caatgcaccc aagaggcctc
361cttcggcctt cttcctcttc tgctctgagt atcgcccaaa aatcaaagga gaacatcctg
421gcctgtccat tggtgatgtt gcgaagaaac tgggagagat gtggaataac actgctgcag
481atgacaagca gccTTATGAA AAGAAGGCTG CGAAGCTGAA GGAAAAATAC GAAAAGGATA
541TTGCTGCATA TCGAGCTAAA GGAAAGCCTG ATGCAGCAAA AAAGGGAGTT GTCAAGGCTG
601AAAAAAGCAA GAAAAAGAAG GAAGAGGAGG AAGATGAGGA AGATGAAGAG GATGAGGAGG
661AGGAGGAAGA TGAAGAAGAT GAAGATGAAG AAGAGGATGA TGATGATGAA TACCCAACTT
721TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
781CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
841CTTGTGGAAA GGACGATGTA ATATTACCAT GCAATTGTTG ACGCGTTAAG TCgacaatca
901acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)