Construct: ORF TRCN0000471616
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014273.1_s317c1
- Derived from:
- ccsbBroadEn_02871
- DNA Barcode:
- TGTTAAAATTCTCAGCTCTTGACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF345 (25850)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471616
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25850 | ZNF345 | zinc finger protein 345 | NM_001242472.2 | 100% | 100% | |
| 2 | human | 25850 | ZNF345 | zinc finger protein 345 | NM_001242474.1 | 100% | 100% | |
| 3 | human | 25850 | ZNF345 | zinc finger protein 345 | NM_001242475.1 | 100% | 100% | |
| 4 | human | 25850 | ZNF345 | zinc finger protein 345 | NM_001242476.1 | 100% | 100% | |
| 5 | human | 25850 | ZNF345 | zinc finger protein 345 | NM_003419.4 | 100% | 100% | |
| 6 | human | 25850 | ZNF345 | zinc finger protein 345 | XM_011526704.3 | 100% | 100% | |
| 7 | human | 25850 | ZNF345 | zinc finger protein 345 | XM_017026568.1 | 100% | 100% | |
| 8 | human | 25850 | ZNF345 | zinc finger protein 345 | XM_017026569.2 | 100% | 100% | |
| 9 | human | 25850 | ZNF345 | zinc finger protein 345 | XM_017026570.2 | 100% | 100% | |
| 10 | human | 25850 | ZNF345 | zinc finger protein 345 | XM_017026571.2 | 100% | 100% | |
| 11 | human | 25850 | ZNF345 | zinc finger protein 345 | XM_017026572.2 | 100% | 100% | |
| 12 | human | 25850 | ZNF345 | zinc finger protein 345 | XM_017026573.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1530
- ORF length:
- 1464
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga aaaccttaca aaacacagca ttgagtgttc aagtttcaga ggtgattggg 121 aatgtaaaaa ccagtttgag agaaaacagg gatctcagga aggacatttc agtgaaatga 181 tatttactcc tgaagacatg cccactttca gtatccagca tcagagaatt catactgatg 241 agaaactcct tgaatgtaag gaatgtggga aggattttag ttttgtatca gtccttgttc 301 gacatcagcg aattcatact ggtgagaaac cttatgaatg caaagaatgt ggcaaggcct 361 ttggtagtgg tgcaaacctt gcttaccatc aaagaattca tactggtgag aagccttttg 421 aatgtaaaga atgtgggaag gcctttggta gtggctcaaa ccttactcac catcagagaa 481 ttcatactgg tgagaaaccc tatgagtgta aggaatgtgg gaaagccttt agttttggat 541 caggccttat tcgacatcag atcattcaca gtggtgagaa gccttatgag tgtaaggaat 601 gtgggaagtc ctttagtttt gaatcagccc ttattcggca tcacagaatt cacacaggtg 661 agaaacctta tgaatgtata gattgtggta aagcctttgg cagtggttca aaccttactc 721 aacatcggcg gattcatact ggtgagaaac cttatgaatg caaagcatgt ggaatggcct 781 ttagcagtgg ttcggctctt actcggcatc agagaattca taccggtgag aaaccatata 841 tatgtaatga atgtggtaag gcctttagtt ttggatcagc ccttactcga catcaaagaa 901 ttcatactgg tgagaaacct tatgtatgta aggaatgtgg gaaggctttt aatagtggct 961 cagatctcac tcagcatcag agaattcaca ctggtgagaa accctatgag tgtaaggagt 1021 gtgagaaagc ctttagaagt ggttcaaaac ttattcagca tcaaagaatg catactggag 1081 agaaaccTTA TGAATGTAAG GAATGTGGGA AGACCTTTAG TAGTGGTTCA GACCTTACTC 1141 AACATCACAG AATTCATACT GGTGAGAAAC CCTATGAATG TAAGGAATGT GGGAAGGCCT 1201 TTGGTAGTGG CTCAAAACTT ATCCAACACC AGCTAATCCA TACTGGTGAA AGACCCTATG 1261 AATGTAAAGA ATGTGGAAAG TCCTTTAGTA GTGGTTCAGC TCTTAATCGG CACCAGAGAA 1321 TACACACTGG TGAGAAACCC TATGAATGTA AGGAGTGTGG GAAGGCTTTT TATAGTGGCT 1381 CAAGCCTTAC TCAGCATCAG AGAATTCATA CAGGTGAGAA ACTTTATGAA TGTAAGAACT 1441 GTGGGAAGGC TTATGGGAGG GATTCAGAGT TTCAGCAACA TAAGAAAAGT CATAATGGTA 1501 AGAAACTCTG CGAATTGGAA ACTATAAATT GCCCAACTTT CTTGTACAAA GTGGTTGATA 1561 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1621 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATGTTA 1681 AAATTCTCAG CTCTTGACCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1741 tgaaagatt