Construct: ORF TRCN0000471633

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001822.1_s317c1
Derived from:
ccsbBroadEn_01557
DNA Barcode:
AAGATACACTGCTCCTTTAGTTCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SMARCD1 (6602)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471633
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6602 SMARCD1 SWI/SNF related, matrix ass... NM_003076.5 100% 100%
2 human 6602 SMARCD1 SWI/SNF related, matrix ass... NM_139071.3 92% 92% 1265_1266ins123
3 human 6602 SMARCD1 SWI/SNF related, matrix ass... XM_005269107.4 92% 92% 531_532ins123
4 human 6602 SMARCD1 SWI/SNF related, matrix ass... XR_944684.2 53.2% 1_134del;1680_2901del
5 human 6602 SMARCD1 SWI/SNF related, matrix ass... XM_011538695.2 50.3% 50% (many diffs)
6 human 6602 SMARCD1 SWI/SNF related, matrix ass... XR_944683.2 47.7% 1_134del;1680_3236del
7 mouse 83797 Smarcd1 SWI/SNF related, matrix ass... NM_031842.2 93.2% 99.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1611
ORF length:
1545
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc ggcccgggcg ggtttccagt ctgtggctcc aagcggcggc gccggagcct
121caggaggggc gggcgcggct gctgccttgg gcccgggcgg aactccgggg cctcctgtgc
181gaatgggccc ggctccgggt caagggctgt accgctcccc gatgcccgga gcggcctatc
241cgagaccagg tatgttgcca ggcagccgaa tgacacctca gggaccttcc atgggacccc
301ctggctatgg ggggaaccct tcagtccgac ctggcctggc ccagtcaggg atggatcagt
361cccgcaagag acctgcccct cagcagatcc agcaggtcca gcagcaggcg gtccaaaatc
421gaaaccacaa tgcaaagaaa aagaagatgg ctgacaaaat tctacctcaa aggattcgtg
481aactggtacc agaatcccag gcctatatgg atctcttggc ttttgaaagg aaactggacc
541agactatcat gaggaaacgg ctagatatcc aagaggcctt gaaacgtccc atcaagcaaa
601aacggaagct gcgaattttc atttctaaca ctttcaatcc ggctaagtca gatgccgagg
661atggggaagg gacggtggct tcctgggagc ttcgggtaga aggacggctc ctggaggatt
721cagccttgtc caaatatgat gccactaaac aaaagaggaa gttctcttcc ttttttaagt
781ccttggtgat tgaactggac aaagacctgt atgggccaga caaccatctg gtagaatggc
841acaggaccgc cactacccag gagaccgatg gctttcaggt gaagcggccg ggagacgtga
901atgtacggtg tactgtccta ctgatgctgg attaccagcc tccccagttt aaattagacc
961cccgcctagc tcgactcctg ggcatccata cccagactcg tccagtgatc atccaagcac
1021tgtggcaata tattaagaca cataagctcc aggaccctca cgagcgggag tttgtcatct
1081gtgacaagta cctgcagcag atctttgagt ctcaacgtat gaagttttca gagatcccTC
1141AGCGGCTCCA TGCCTTGCTT ATGCCACCAG AACCTATCAT CATTAATCAT GTCATCAGTG
1201TTGACCCGAA TGATCAGAAA AAGACAGCTT GTTATGACAT TGATGTTGAA GTGGATGACA
1261CCTTGAAGAC CCAGATGAAT TCTTTTCTGC TGTCCACTGC CAGCCAACAG GAGATTGCTA
1321CTCTAGACAA CAAGATCCAT GAGACAATAG AAACCATCAA CCAGCTGAAG ACTCAGCGGG
1381AGTTCATGCT GAGCTTTGCC AGAGACCCTC AGGGTTTCAT CAATGACTGG CTTCAGTCCC
1441AGTGCAGGGA CCTCAAGACA ATGACTGATG TGGTGGGTAA CCCAGAGGAG GAGCGCCGAG
1501CTGAGTTCTA CTTCCAGCCC TGGGCTCAGG AGGCTGTGTG CCGATACTTC TACTCCAAGG
1561TGCAGCAGAG ACGACAAGAA TTAGAGCAAG CCCTGGGAAT CCGGAATACA TACCCAACTT
1621TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1681CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1741CTTGTGGAAA GGACGAAAGA TACACTGCTC CTTTAGTTCA ACGCGTTAAG TCgacaatca
1801acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)