Construct: ORF TRCN0000471996

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003183.1_s317c1
Derived from:
ccsbBroadEn_12720
DNA Barcode:
CCAGGTTCTCTACGCCAGAAACAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLPB (81570)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000471996
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 81570 CLPB ClpB homolog, mitochondrial... NM_001258393.3 47.2% 46.7% (many diffs)
2 human 81570 CLPB ClpB homolog, mitochondrial... NM_001258394.2 46.2% 45.7% (many diffs)
3 human 81570 CLPB ClpB homolog, mitochondrial... NM_001258392.3 45.2% 44.7% (many diffs)
4 human 81570 CLPB ClpB homolog, mitochondrial... XM_005274320.1 45.1% 44.6% (many diffs)
5 human 81570 CLPB ClpB homolog, mitochondrial... NM_030813.6 43.3% 42.8% (many diffs)
6 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_011241703.2 56.5% 60.9% (many diffs)
7 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_006507489.3 55.9% 60.3% (many diffs)
8 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_011241702.2 47.9% 51.7% (many diffs)
9 mouse 20480 Clpb ClpB caseinolytic peptidase B NM_009191.3 40.3% 43.5% (many diffs)
10 mouse 20480 Clpb ClpB caseinolytic peptidase B XM_006507488.3 38.6% 41.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1011
ORF length:
945
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgct aaaaagttgg tacttgcttg tttccacaca gggcttcatc aggctggaca
121tgtccgagtt ccaggagcga cacgaggtgg ccaagtttat tgggtctcca ccaggctacg
181ttggccatga ggagggtggc cagctgacca agaagttgaa gcagtgcccc aatgctgtgg
241tgctctttga tgaagtagac aaggcccatc cagatgtgct caccatcatg ctgcagctgt
301ttgatgaggg ccggctgaca gatggaaaag ggaagaccat tgattgcaag gacgccatct
361tcatcatgac ctccaatgtg gccagcgacg agatcgcaca gcacgcgctg cagctgaggc
421aggaagcttt ggagatgagc cgtaaccgta ttgccgaaaa cctgggggat gtccagataa
481gtgacaagat caccatctca aagaacttca aggagaatgt gattcgccct atcctgaaag
541ctcacttccg gagggatgag tttctgggac ggatcaatga gatcgtctac ttcctcccct
601tctgccactc ggagctcatc caactcgtca acaaggaact aaacttctgg gCCAAGAGAG
661CCAAGCAAAG GCACAACATC ACGCTGCTCT GGGACCGCGA GGTGGCAGAT GTGCTGGTCG
721ACGGCTACAA TGTGCACTAT GGCGCCCGCT CCATCAAACA TGAGGTAGAA CGCCGTGTGG
781TGAACCAGCT GGCAGCAGCC TATGAGCAGG ACCTGCTGCC AGGGGGCTGT ACTTTGCGCA
841TCACGGTGGA GGACTCAGAC AAGCAGCTAC TCAAAAGCCC AGAACTGCCC TCACCCCAGG
901CTGAGAAGCG CCTCCCCAAG CTGCGTCTGG AGATCATCGA CAAGGACAGC AAGACTCGCA
961GACTGGACAT CCGGGCACCA CTGCACCCTG AGAAGGTGTG CAACACCATC TATCCAACTT
1021TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1081CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1141CTTGTGGAAA GGACGACCAG GTTCTCTACG CCAGAAACAA ACGCGTTAAG TCgacaatca
1201acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)