Construct: ORF TRCN0000472066
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014199.1_s317c1
- Derived from:
- ccsbBroadEn_12262
- DNA Barcode:
- GTACAATCACTATCATTTAATACT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C1orf112 (55732)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472066
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001363739.1 | 100% | 100% | |
| 2 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001366771.1 | 100% | 100% | |
| 3 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001366772.1 | 100% | 100% | |
| 4 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001366773.1 | 100% | 100% | |
| 5 | human | 55732 | C1orf112 | chromosome 1 open reading f... | XM_011509735.2 | 100% | 100% | |
| 6 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001320048.1 | 73.8% | 73.8% | 1_564del |
| 7 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001366768.1 | 64.3% | 64.3% | 1_882del |
| 8 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001320047.2 | 62.1% | 62.1% | 1_969del |
| 9 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001366769.1 | 58.1% | 58.1% | 1_1143del |
| 10 | human | 55732 | C1orf112 | chromosome 1 open reading f... | XR_921872.1 | 54% | 1_1241del;2327_2328insCAGGA;2827_2930del | |
| 11 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NM_001366770.1 | 53.1% | 50.4% | (many diffs) |
| 12 | human | 55732 | C1orf112 | chromosome 1 open reading f... | XM_017001722.2 | 51.3% | 51.5% | (many diffs) |
| 13 | human | 55732 | C1orf112 | chromosome 1 open reading f... | XM_017001723.1 | 48.3% | 46.4% | (many diffs) |
| 14 | human | 55732 | C1orf112 | chromosome 1 open reading f... | NR_159440.1 | 37.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1659
- ORF length:
- 1590
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcaggtggtt ttggacagta aattagacct gccatgtgaa ctgcagtttc 121 cacaatgtct tcttctggtt gttgtcatgg ataagctgcc atctcagcct aaggaagtgc 181 aaaccctgtg gtgcacagac agccaggtct cagaaacgac aaccaggata tctctactca 241 aagccgtttt ctacagtttt gagcagtgtt ctggtgaact ctctctacct gttcatttac 301 agggattaaa gagtaagggg aaagctgagg tggctgtcac cttgtatcag catgtttgtg 361 ttcatctgtg tacatttatt acttcctttc atccctcact gtttgctgaa ctggatgctg 421 ctctgctgaa tgctgtactt agtgctaata tgatcacctc tttgttagct atggatgcat 481 ggtgcttcct tgctcgatat gggactgctg aactgtgtgc acaccatgtc accatagtgg 541 ctcatctgat aaagtcatgc cctggagaat gttatcaact catcaaccta tcaatactgt 601 tgaagcgtct ctttttcttc atggcaccac cccatcagct ggagtttatc cagaaatttt 661 ccccaaaaga agcagaaaat ctgcctctgt ggcaacatat ttccttccag gcgttacctc 721 ctgagcttag ggaacaaact gtccatgagg tcaccacagt aggcactgca gaatgcagga 781 aatggctgag caggagtcgt actttgggag aactagaatc tctgaacaca gtactgtctg 841 ctttgcttgc agtatgtaat tctgctggtg aagctttgga tacaggaaaa caaactgcaa 901 ttatcgaagt tgtgagtcag ctttgggctt ttttaaacat taaacaggta gcagatcaac 961 cttatgttca acagacattc agccttttac ttccactgtt gggatttttc attcaaactc 1021 tagatcctaa actgatactt caggcagtaa ctttgcagac ctcgctactt aaattagagc 1081 ttcctgacta tgttcgtttg gcaatgttgg attttgtatc ttctttagga aaacttttta 1141 tacctgaagc tatccaggac agaattctgc ccaacctgtc ctgtatgttt gccttactgc 1201 tagctgacag gagttggctg ctagaacaac ataccttgga ggcgtttact cagttcgctg 1261 agggaacaaa tcatgaagag atagttccac agtgtctcag ttctgaagaa actaagaaca 1321 aagttgtatc ctttctggag aagactgggt ttgtagatga aactgaagct gccaaagtgg 1381 aacgtgtgaa acaggaaaaa ggtattttct gggaaccctt tgctaatgtg actgtagaag 1441 aagcaaagag gtcatcttta cagccttatg caaaaagagc tcgtcaggag ttcccctggg 1501 aagaagagta caggtcagcg ctgcatacaa tagcaggggc tttggaagca actgagtcac 1561 tactccaaaa gggtcctgct ccagcctggc tttcaatgga aatGGAGGCG CTCCAAGAAA 1621 GGATGGATAA GCTAAAACGT TACATACATA CTCTAGGGTT GCCAACTTTC TTGTACAAAG 1681 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1741 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1801 ACGAGTACAA TCACTATCAT TTAATACTAC GCGTTAAGTC gacaatcaac ctctggatta 1861 caaaatttgt gaaagatt