Construct: ORF TRCN0000472069

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015875.1_s317c1
Derived from:
ccsbBroadEn_12083
DNA Barcode:
TGGTGTGATTGTGCTCGTGCATTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TET2 (54790)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472069
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54790 TET2 tet methylcytosine dioxygen... XM_006714242.3 32.3% 32.2% 1_3861del;4984A>G
2 human 54790 TET2 tet methylcytosine dioxygen... NM_001127208.2 30.7% 30.6% 1_4161del;5284A>G
3 human 54790 TET2 tet methylcytosine dioxygen... XM_005263082.3 30.7% 30.6% 1_4161del;5284A>G
4 human 54790 TET2 tet methylcytosine dioxygen... XM_024454102.1 30.7% 30.6% 1_4161del;5284A>G
5 human 54790 TET2 tet methylcytosine dioxygen... XM_024454103.1 30.7% 30.6% 1_4161del;5284A>G
6 human 54790 TET2 tet methylcytosine dioxygen... XR_244633.3 19.9% 1_4098del;5221A>G;5944_9230del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1914
ORF length:
1845
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gcagaatggc agcacattgg tatgcactct cactagagaa gacaatcgag
121aatttggagg aaaacctgag gatgagcagc ttcacgttct gcctttatac aaagtctctg
181acgtggatga gtttgggagt gtggaagctc aggaggagaa aaaacggagt ggtgccattc
241aggtactgag ttcttttcgg cgaaaagtca ggatgttagc agagccagtc aagacttgcc
301gacaaaggaa actagaagcc aagaaagctg cagctgaaaa gctttcctcc ctggagaaca
361gctcaaataa aaatgaaaag gaaaagtcag ccccatcacg tacaaaacaa actgaaaacg
421caagccaggc taaacagttg gcagaacttt tgcgactttc aggaccagtc atgcagcagt
481cccagcagcc ccagcctcta cagaagcagc caccacagcc ccagcagcag cagagacccc
541agcagcagca gccacatcac cctcagacag agtctgtcaa ctcttattct gcttctggat
601ccaccaatcc atacatgaga cggcccaatc cagttagtcc ttatccaaac tcttcacaca
661cttcagatat ctatggaagc accagcccta tgaacttcta ttccacctca tctcaagctg
721caggttcata tttgaattct tctaatccca tgaaccctta ccctgggctt ttgaatcaga
781atacccaata tccatcatat caatgcaatg gaaacctatc agtggacaac tgctccccat
841atctgggttc ctattctccc cagtctcagc cgatggatct gtataggtat ccaagccaag
901accctctgtc taagctcagt ctaccaccca tccatacact ttaccagcca aggtttggaa
961atagccagag ttttacatct aaatacttag gttatggaaa ccaaaatatg cagggagatg
1021gtttcagcag ttgtaccatt agaccaaatg tacatcatgt agggaaattg cctccttatc
1081ccactcatga gatggatggc cacttcatgg gagccacctc tagattacca cccaatctga
1141gcaatccaaa catggactat aaaaatggtg aacatcattc accttctcac gtaatccata
1201actacagtgc agctccgggc atgttcaaca gctctcttca tgccctgcat ctccaaaaca
1261aggagaatga catgctttcc cacacagcta atgggttatc aaagatgctt ccagctctta
1321accatgatag aactgcttgt gtccaaggag gcttacacaa attaagtgat gctaatggtc
1381aggaaaagca gccattggca ctagtccagg gtgtggcttc tggtgcagag gacaacgatg
1441aggtctggtc agacagcgag cagagctttc tggatcctga cattggggga gtggccgtgg
1501ctccaactca tgggtcaatt ctcattgagt gtgcaaagcg tgagctgcat gccacaaccc
1561ctttaaagaa tcccaatagg aatcacccca ccaggatctc cctcgtcttt taccagcata
1621agagcatgaa tgagccaaaa catggcttgg ctctttggga agccaaaatg gctgaaaaag
1681cccgtgagaa agaggaagag tgtgaaaagt atggcccaga ctatgtgcct cagaaatccc
1741atggcaaaaa agtgaaacgg gagcctgcTG AGCCACATGA AACTTCAGAG CCCACTTACC
1801TGCGTTTCAT CAAGTCTCTT GCCGAAAGGA CCATGTCCGT GACCACAGAC TCCACAGTAA
1861CTACATCTCC ATATGCCTTC ACTCGGGTCA CAGGGCCTTA CAACAGATAT ATATTGCCAA
1921CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG
1981ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA
2041TATCTTGTGG AAAGGACGAT GGTGTGATTG TGCTCGTGCA TTGACGCGTT AAGTCgacaa
2101tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)