Construct: ORF TRCN0000472139

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014890.1_s317c1
Derived from:
ccsbBroadEn_11792
DNA Barcode:
CTGTATTCCGTGGTCCGCTTAAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
C2CD2 (25966)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472139
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25966 C2CD2 C2 calcium dependent domain... NM_199050.3 69.7% 66.7% (many diffs)
2 human 25966 C2CD2 C2 calcium dependent domain... XM_005261109.4 69.7% 66.7% (many diffs)
3 human 25966 C2CD2 C2 calcium dependent domain... XM_011529524.3 66.2% 65.8% (many diffs)
4 human 25966 C2CD2 C2 calcium dependent domain... XM_011529523.2 61.3% 58.7% (many diffs)
5 human 25966 C2CD2 C2 calcium dependent domain... XM_017028315.1 60.2% 57.3% (many diffs)
6 human 25966 C2CD2 C2 calcium dependent domain... NM_015500.2 54.3% 52.1% (many diffs)
7 human 25966 C2CD2 C2 calcium dependent domain... XM_011529522.2 53.4% 51.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1230
ORF length:
1164
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcg gctctcccct ttccatttac agctggagtt ccacatgaag gagaagagag
121aggacctcca gattagctgg tctttcatca gtgtgccgga aatggccgtt aatatccagc
181ccaaagcact gggggaggac caggtggctg agacaagtgc gatgtctgac gttctcaagg
241acatcttgaa gcatttggct ggttctgcct ctccatcagt ggttctgatt accaagccca
301cgactgtaaa ggaagctcag aacttacagt gtgctgcatc tactgctcag gaatcctgtc
361ctcctaaacc tccaagggct cacgagctga agctactggt gaggaacatc cacgtcttgc
421tgctcagcga gcccggtgcc tcaggccaca ttaatgcagt gtgcgtcgtg cagctgaacg
481atcctgttca gaggttctcc agcaccctga cgaaaaacac tccggacctc atgtgggaag
541aggaattcac cttcgagttg aatgccaagt cgaaggagtt acacctgcag atttcagagg
601ctgggcgatc ctcagaaggt ctgctggcga cggcgacagt tcctctggac ttatttaaga
661agcagccttc tgggccacag agcttcacgc tgaccagcgg gtctgcctgc ggcagctcag
721tgctgggctc ggtcacggca gagttctctt acatggaacc tggtgaattg aaatcctggc
781ccaTCCCTCC CCCTGTTCCT GCTGCAAAAA TAGAAAAGGA CCGCACGGTG ATGCCCTGTG
841GGACTGTGGT CACTACTGTC ACTGCTGTGA AGACCAAGCC TCGCGTCGAC GTGGGGAGGG
901CGTCCCCGCT GAGCTCTGAT TCTCCGGTGA AGACTCCCAT CAAGGTGAAG GTGATCGAGA
961AGGACATCTC TGTCCAGGCC ATCGCCTGCC GCAGCGCCCC CGTCAGCAAA ACACTCTCTT
1021CTTCAGACAC AGAATTGTTG GTGTTGAATG GTTCGGATCC AGTGGCTGAA GTGGCCATTC
1081GACAGCTCAG TGAATCTTCA AAGCTGAAAC TCAAGTCGCC ACGGAAGAAA AGCACTATTA
1141TCATATCAGG GATCTCCAAG GTACCATCGT GGTGGCTGGG GAGGTGTTCA TCTGGTCATC
1201TGTCAGTGAC CTGCTGCTCC TCTGCCCTTT GCCCAACTTT CTTGTACAAA GTGGTTGATA
1261TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1321CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACTGTA
1381TTCCGTGGTC CGCTTAAGAA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1441tgaaagatt

Download FASTA (ORF) (Full)