Construct: ORF TRCN0000472159
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007986.1_s317c1
- Derived from:
- ccsbBroadEn_12711
- DNA Barcode:
- TGACTTCGCCTATGTAAATGCCCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNRD1ASP (80862)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472159
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80862 | ZNRD1ASP | zinc ribbon domain containi... | NR_145418.1 | 16.9% | 1_376del;938_3304del | |
| 2 | human | 80862 | ZNRD1ASP | zinc ribbon domain containi... | NR_145417.1 | 15.7% | 1_630del;1192_3558del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 630
- ORF length:
- 561
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat ggaggagaaa acaacccaga gcgtagaagg actaaaacag tactgtttgg 121 tacctGAGAG AGAGATGAAA CACATAGAAA GGCACATACA TCAAACAGGA AAGGCTGGAG 181 AATTTAAGAA CAAACCATTT AGACAAGTAC TACAACCCCC CAATGAAACA AAATTACCAA 241 AAATTATGCC AGAAGGGCAT GGCATCCAGA ACGCACAGAG AAGAAAGCAG GTAAATGAGA 301 GGGAACAGAT GCAGACTAAG GATCACCAGG AACGCATGAT TCGAGGGAGA GAACTTGCAG 361 AACAAAGACT CAAGGAGAGA ATCTTGAGAA GAAGCCAGAG CCAGCTACTT ACATATGAGA 421 AGCATGAGAG AGTAAAAGAG ATAAAGGAGT TTGAAAGAGT TATTGCGTAT CTTCTTTTCC 481 AACCATGCAG TAGAAGTCGG ATTAAAGTGA GTATTCTTAT GGATAAGTCT CAGAATGGAG 541 AGAAGGTGAA TACAATTGTG AAACCATATC AAAGAAAATT CTTGGCAATG CCACCCTTTT 601 TAAGAAGTCA AATAGGAAAA ATAAGAGATT TGCCAACTTT CTTGTACAAA GTGGTTGATA 661 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 721 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATGACT 781 TCGCCTATGT AAATGCCCGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 841 tgaaagatt