Construct: ORF TRCN0000472256

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009998.1_s317c1
Derived from:
ccsbBroadEn_11781
DNA Barcode:
TCACCCTCTCAATAATTGGGGCGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC28A (25901)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472256
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25901 CCDC28A coiled-coil domain containi... NM_015439.2 58.9% 58.3% 1_337del;342_343insA
2 human 25901 CCDC28A coiled-coil domain containi... XM_011535728.3 31.1% 30.6% 1_337del;342_343insA;594_594delTins229
3 mouse 215814 Ccdc28a coiled-coil domain containi... NM_144820.3 75.4% 82% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
552
ORF length:
486
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc aaaaaaaaat gccattccag tgagtaaaag cacagggttt tcaaatcctg
121catcacagtc aacttcacag cgaccaaagt taaaaagagt gatgaaagaa aagaccaaac
181cTCAGGGTGG AGAGGGCAAA GGCGCTCAGT CAACTCCGAT CCAGCACTCC TTCCTCACTG
241ATGTCTCAGA TGTTCAGGAG ATGGAGAGAG GGCTGCTCAG TCTTTTGAAT GATTTCCACT
301CTGGAAAACT TCAAGCATTT GGAAATGAAT GTTCCATTGA ACAGATGGAA CATGTTCGGG
361GAATGCAGGA GAAATTAGCT CGCTTGAATT TGGAGCTCTA TGGGGAGTTA GAGGAACTTC
421CTGAGGATAA GAGAAAAACA GCCAGTGACT CCAATCTGGA TAGGCTTCTG TCAGATTTAG
481AAGAATTGAA TTCTTCCATA CAAAAACTCC ATTTGGCAGA TGCACAAGAT GTTCCAAATA
541CTTCTGCTAG CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
601ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
661CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATCA CCCTCTCAAT AATTGGGGCG
721GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)