Construct: ORF TRCN0000472419
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015844.1_s317c1
- Derived from:
- ccsbBroadEn_11193
- DNA Barcode:
- ATCTTAGACCGACATAGCGTTTGA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAPPC10 (7109)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472419
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529730.2 | 30.6% | 29.6% | (many diffs) |
| 2 | human | 7109 | TRAPPC10 | trafficking protein particl... | XR_001754895.1 | 27.1% | (many diffs) | |
| 3 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529725.2 | 26.1% | 25.3% | (many diffs) |
| 4 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529726.2 | 26.1% | 25.3% | (many diffs) |
| 5 | human | 7109 | TRAPPC10 | trafficking protein particl... | XR_001754896.1 | 26.1% | (many diffs) | |
| 6 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529720.2 | 24.4% | 23.6% | (many diffs) |
| 7 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529718.2 | 23% | 22.3% | (many diffs) |
| 8 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529717.2 | 22.8% | 22.1% | (many diffs) |
| 9 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_017028454.2 | 22.4% | 21.7% | (many diffs) |
| 10 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_005261168.4 | 22.2% | 21.6% | (many diffs) |
| 11 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529716.2 | 21.7% | 21.1% | (many diffs) |
| 12 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529715.2 | 21.6% | 20.9% | (many diffs) |
| 13 | human | 7109 | TRAPPC10 | trafficking protein particl... | NM_003274.5 | 21.5% | 20.9% | (many diffs) |
| 14 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529714.2 | 20.9% | 20.3% | (many diffs) |
| 15 | human | 7109 | TRAPPC10 | trafficking protein particl... | XM_011529719.2 | 16.9% | 15.5% | (many diffs) |
| 16 | human | 7109 | TRAPPC10 | trafficking protein particl... | XR_937558.2 | 13% | (many diffs) | |
| 17 | human | 7109 | TRAPPC10 | trafficking protein particl... | XR_001754893.1 | 12.9% | (many diffs) | |
| 18 | mouse | 216131 | Trappc10 | trafficking protein particl... | NM_001081055.1 | 19.8% | 20.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 894
- ORF length:
- 828
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga cgcctctgag gagccgctgc cgccggtgat ctacaccatg gagaacaagc 121 ccatcgtcac ctgtgctgga gatcagaatt tatttacctc tgtttatcca acgctctctc 181 agcagcttcc aagagaacca atggaatgga gaaggtccta tggccgggct ccgaagatga 241 ttcacctaga gtctaacttt gttcaattca aagaggagct gctgcccaaa gaaggaaaca 301 aagctctgct cacgtttccc ttcctccata tttactggac agagtgctgt gataccgaag 361 tgtataaagc tacagtaaaa gatgacctca ccaagtggca gaatgttctg aaggctcata 421 gctctgtgga ctggttaata gtgatagttg aaaatgatgc caagaaaaaa aacaaaacca 481 acatccttcc ccgaacctct attGTGGACA AAATAAGAAA TGATTTTTGT AATAAACAGA 541 GTGACAGGTG TGTTGTGCTC TCCGACCCCT TGAAGGACTC TTCTCGAACT CAGGAATCCT 601 GGAATGCCTT CCTGACCAAA CTCAGGACAT TGCTTCTTAT GTCTTTTACC AAAAACCTAG 661 GCAAGTTTGA GGATGACATG AGAACCTTGA GGGAGAAGAG GACTGAGCCA GGCTGGAGCT 721 TTTGTGAATA TTTCATGGTT CAGGAGGAGC TTGCCTTTGT TTTCGAGATG CTGCAGCAGT 781 TCGAGGACGC CCTGGTGCAG TACGACGAAC TGGACGCCCT CTTCTCTCAG TATGTGGTCA 841 ACTTCGGGGC CGGGGGTATA AAATGTCCTT TCCACAACTC AGTGGCCTGC TGGTGCCCAA 901 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 961 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 1021 TATCTTGTGG AAAGGACGAA TCTTAGACCG ACATAGCGTT TGAACGCGTT AAGTCgacaa 1081 tcaacctctg gattacaaaa tttgtgaaag att