Construct: ORF TRCN0000472447
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017657.1_s317c1
- Derived from:
- ccsbBroadEn_03076
- DNA Barcode:
- GCCATGGAATGACCACCAAATTTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STXBP6 (29091)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472447
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 29091 | STXBP6 | syntaxin binding protein 6 | NM_001304476.1 | 100% | 100% | |
| 2 | human | 29091 | STXBP6 | syntaxin binding protein 6 | NM_001304477.1 | 100% | 100% | |
| 3 | human | 29091 | STXBP6 | syntaxin binding protein 6 | NM_001351941.1 | 100% | 100% | |
| 4 | human | 29091 | STXBP6 | syntaxin binding protein 6 | NM_001351942.1 | 100% | 100% | |
| 5 | human | 29091 | STXBP6 | syntaxin binding protein 6 | NM_001351943.1 | 100% | 100% | |
| 6 | human | 29091 | STXBP6 | syntaxin binding protein 6 | NM_014178.7 | 100% | 100% | |
| 7 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021231.2 | 100% | 100% | |
| 8 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021235.1 | 100% | 100% | |
| 9 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021238.1 | 100% | 100% | |
| 10 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021239.1 | 100% | 100% | |
| 11 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021240.2 | 100% | 100% | |
| 12 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021241.1 | 100% | 100% | |
| 13 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_024449547.1 | 100% | 100% | |
| 14 | human | 29091 | STXBP6 | syntaxin binding protein 6 | NM_001351940.1 | 94.5% | 94.5% | 1_36del |
| 15 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021232.1 | 94.5% | 94.5% | 1_36del |
| 16 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_017021234.1 | 94.5% | 94.5% | 1_36del |
| 17 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_006720121.4 | 61.9% | 61.9% | 0_1ins240 |
| 18 | human | 29091 | STXBP6 | syntaxin binding protein 6 | XM_011536669.2 | 61.9% | 61.9% | 0_1ins240 |
| 19 | mouse | 217517 | Stxbp6 | syntaxin binding protein 6 ... | NM_144552.3 | 92.8% | 98.5% | (many diffs) |
| 20 | mouse | 217517 | Stxbp6 | syntaxin binding protein 6 ... | XM_006515667.3 | 92.8% | 98.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 696
- ORF length:
- 630
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag tgccaaatct gctatcagca aggaaatttt tgcacctctt gatgaaagga 121 tgctgggagc tgtccaagtc aagaggagga caaagaaaaa gattcctttc ttggcaactg 181 gaggtcaagg cgaatattta acttatatct gcctgtcagt gacaaacaag aaacccacac 241 aggcgtccat cacaaaggtc aaacagtttg aaggctccac atcatttgtt cggagatcac 301 agtggatgct cgagcagctt cgccaggtta atgGTATCGA TCCTAATGGG GATTCGGCAG 361 AGTTTGATTT GTTGTTTGAA AATGCTTTTG ACCAGTGGGT AGCCAGCACA GCGTCAGAAA 421 AATGCACCTT CTTCCAGATC CTCCACCATA CCTGCCAGAG GTACCTCACG GACAGGAAGC 481 CAGAGTTTAT TAACTGCCAA TCCAAAATTA TGGGAGGAAA CAGCATCCTC CATTCAGCTG 541 CTGACAGCGT GACCAGCGCA GTGCAGAAGG CAAGCCAGGC CTTGAATGAG CGTGGAGAGC 601 GATTAGGCCG AGCAGAGGAG AAGACAGAAG ACCTGAAGAA CAGCGCCCAG CAGTTTGCAG 661 AAACTGCGCA CAAGCTTGCC ATGAAGCACA AATGTTGCCC AACTTTCTTG TACAAAGTGG 721 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 781 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 841 AGCCATGGAA TGACCACCAA ATTTCACGCG TTAAGTCgac aatcaacctc tggattacaa 901 aatttgtgaa agatt