Construct: ORF TRCN0000472469
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015206.1_s317c1
- Derived from:
- ccsbBroadEn_02914
- DNA Barcode:
- CGAGGACCATCACGTCGTGGGGCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCDC9 (26093)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472469
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26093 | CCDC9 | coiled-coil domain containi... | NM_015603.3 | 100% | 100% | |
| 2 | human | 26093 | CCDC9 | coiled-coil domain containi... | XM_017026578.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1659
- ORF length:
- 1593
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc agccacactc gatttgaaat caaaggagga gaaggatgct gagttggaca 121 agaggatcga ggctcttcgg cggaagaatg aggccctcat ccggcgctac caggagattg 181 aggaagaccg taagaaagct gaacttgagg gagtcgcagt cacagctccc cgaaagggcc 241 gctcagtgga gaaggagaac gtggcagtgg agtcggagaa gaacctgggt ccttcccgga 301 ggtctcctgg gacccctcgg cccccagggg ccagcaaggg gggccggact cctccacagc 361 agggaggccg ggccggcatg ggccgagcat cgcgcagctg ggagggcagc cccggggagc 421 agcctcgagg aggaggagct gggggccgtg gccggagggg ccggggccga ggttcacctc 481 acctctctgg agctggagac acctcaatct ctgaccgtaa atccaaggag tgggaggagc 541 ggcgcaggca gaacattgag aagatgaatg aggagatgga gaagatcgcc gagtatgagc 601 gcaaccagcg ggaaggggtt cttgaaccca acccagtgcg gaacttcctg gacgaccccc 661 ggcgacgcag cgggcccctg gaggagtctg agcgggaccg ccgggaggag agccgccggc 721 acggccgcaa ctgggggggc cccgacttcg agcgggtgcg ctgtggcctt gagcacgagc 781 ggcagggccg ccgagctggc ctgggcagtg ctggagacat gacgttgtcc atgacgggcc 841 gggagcggtc ggagtacctg cgctggaagc aggagaggga gaagatcgac caggagcggc 901 tgcagaggca ccgcaagccc actggccagt ggaggcgcga gtgggatgcc gagaagaccg 961 atgggatgtt caaggatggc ccagtccctg cccatgaacc atcccaccgc tatgatgacc 1021 aggcctgggc ccggcccccg aagcccccta cttttgggga gttcctgtcc cagcacaaag 1081 ctgaggccag cagccgcaga aggagaaaga gcagtcggcc ccaggccaag gcagcgccca 1141 gggcctacag tgaccatgat gaccgctggg agacaaaaga aggggcagca tccccagccc 1201 ctgagactcc acagccTACT TCCCCCGAGA CTTCCCCCAA GGAGACACCC ATGCAGCCAC 1261 CCGAGATCCC AGCTCCTGCC CACCGGCCTC CTGAAGACGA GGGGGAAGAG AATGAGGGGG 1321 AAGAGGATGA AGAATGGGAG GACATAAGTG AGGATGAGGA AGAGGAGGAG ATCGAGGTGG 1381 AAGAAGGTGA TGAGGAGGAA CCAGCCCAAG ACCACCAAGC CCCAGAGGCT GCCCCCACCG 1441 GGATCCCCTG CAGTGAGCAG GCCCACGGAG TCCCCTTCAG TCCGGAGGAG CCCCTGCTGG 1501 AGCCCCAGGC CCCTGGCACG CCTTCCAGCC CTTTCTCACC ACCCAGCGGC CACCAGCCTG 1561 TGTCCGATTG GGGTGAAGAG GTGGAGCTGA ATTCTCCCCG GACCACTCAC CTGGCTGGCG 1621 CCCTCTCCCC GGGTGAGGCC TGGCCTTTTG AGAGTGTATG CCCAACTTTC TTGTACAAAG 1681 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1741 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1801 ACGACGAGGA CCATCACGTC GTGGGGCAAC GCGTTAAGTC gacaatcaac ctctggatta 1861 caaaatttgt gaaagatt