Construct: ORF TRCN0000472485
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004210.1_s317c1
- Derived from:
- ccsbBroadEn_01566
- DNA Barcode:
- CATAAGTCTCGATTACTCCGGTCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNRPA (6626)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472485
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6626 | SNRPA | small nuclear ribonucleopro... | NM_004596.5 | 100% | 100% | |
| 2 | mouse | 53607 | Snrpa | small nuclear ribonucleopro... | NM_001046637.1 | 86.8% | 94% | (many diffs) |
| 3 | mouse | 53607 | Snrpa | small nuclear ribonucleopro... | NM_001285825.1 | 86.8% | 94% | (many diffs) |
| 4 | mouse | 53607 | Snrpa | small nuclear ribonucleopro... | NM_015782.3 | 86.8% | 94% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 912
- ORF length:
- 846
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc agttcccgag acccgcccta accacactat ttatatcaac aacctcaatg 121 agaagatcaa gaaggatgag ctaaaaaagt ccctgtacgc catcttctcc cagtttggcc 181 agatcctgga tatcctggta tcacggagcc tgaagatgag gggccaggcc tttgtcatct 241 tcaaggaggt cagcagcgcc accaacgccc tgcgctccat gcagggtttc cctttctatg 301 acaaacctat gcgtatccag tatgccaaga ccgactcaga tatcattgcc aagatgaaag 361 gcaccttcgt ggagcgggac cgcaagcggg agaagaggaa gcccaagagc caggagaccc 421 cggccaccaa gaaggctgtg caaggcgggg gagccacccc cgtggtgggg gctgtccagg 481 ggcctgtccc gggcatgccg ccgatgactc aggcgccccg cattatgcac cacatgccgg 541 gCCAGCCGCC CTACATGCCG CCCCCTGGTA TGATCCCCCC GCCAGGCCTT GCACCTGGCC 601 AGATCCCACC AGGGGCCATG CCCCCGCAGC AGCTTATGCC AGGACAGATG CCCCCTGCCC 661 AGCCTCTTTC TGAGAATCCA CCGAATCACA TCTTGTTCCT CACCAACCTG CCAGAGGAGA 721 CCAACGAGCT CATGCTGTCC ATGCTTTTCA ATCAGTTCCC TGGCTTCAAG GAGGTCCGTC 781 TGGTACCCGG GCGGCATGAC ATCGCCTTCG TGGAGTTTGA CAATGAGGTA CAGGCAGGGG 841 CAGCTCGCGA TGCCCTGCAG GGCTTTAAGA TCACGCAGAA CAACGCCATG AAGATCTCCT 901 TTGCCAAGAA GTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 961 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 1021 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACAT AAGTCTCGAT TACTCCGGTC 1081 GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t