Construct: ORF TRCN0000472678
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012374.1_s317c1
- Derived from:
- ccsbBroadEn_09155
- DNA Barcode:
- AACTAATTAAAACTGACCGCAATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ELMOD3 (84173)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472678
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453169.1 | 99.8% | 100% | 882C>T;1134C>T |
| 2 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453170.1 | 99.8% | 100% | 882C>T;1134C>T |
| 3 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453171.1 | 99.8% | 100% | 882C>T;1134C>T |
| 4 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XM_024453172.1 | 99.8% | 100% | 882C>T;1134C>T |
| 5 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001135021.2 | 87.3% | 81.3% | (many diffs) |
| 6 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001135022.2 | 87.3% | 81.3% | (many diffs) |
| 7 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001135023.2 | 87.3% | 81.3% | (many diffs) |
| 8 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001329791.2 | 87.3% | 81.3% | (many diffs) |
| 9 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001329792.2 | 87.3% | 81.3% | (many diffs) |
| 10 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NM_001329793.2 | 87.3% | 81.3% | (many diffs) |
| 11 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XR_001738979.1 | 45.4% | (many diffs) | |
| 12 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NR_138131.2 | 44.1% | (many diffs) | |
| 13 | human | 84173 | ELMOD3 | ELMO domain containing 3 | XR_001738978.1 | 43.8% | (many diffs) | |
| 14 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NR_138133.2 | 42.1% | (many diffs) | |
| 15 | human | 84173 | ELMOD3 | ELMO domain containing 3 | NR_138132.2 | 37.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1239
- ORF length:
- 1173
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgaa tgaaaaatct tgctctttcc atagtaaaga agaattaaga gatggacagg 121 gtgaaagatt gtctgctgga tattctccat catatgacaa ggacaagagt gttctggctt 181 tcagaggaat ccctatctca gagttgaaga accatggcat tctccaggct ctgaccacag 241 aagcttatga atgggagcca cgtgttgtga gtacagaggt ggtcagagcc caagaagaat 301 gggaagctgt ggacaccatc cagccagaga cagggagcca agctagctca gagcagcctg 361 ggcagctaat ctccttcagt gaggccctgc agcacttcca gactgtggac ctttccccct 421 tcaagaaaag aatccagcca actattcgaa ggactgggct cgccgccctc cgacactacc 481 tcttcgggcc tccaaagctc caccagcgcc ttcgggaaga aagggacttg gtcctgacca 541 ttgctcagtg tggcctggat agccaagacc cagtgcatgg ccgagtcctc cagaccatct 601 ataagaagct gaccggctcc aagtttgact gtgcccttca tggaaaccac tgggaggacc 661 tgggctttca gggagcgaat ccagccacag acctgagagg cgcaggcttc cttgccctcc 721 tgcatctgct ctacctggtg atggactcaa agaccttgcc gatggcgcag gagattttcc 781 gcctgtctcg tcaccacatc cagcaattcc ctttctgttt gatgtccgtg aacatcaccc 841 acattgccat ccaggccttg agagaggagt gtctctccag agagtgtaat cggcagcaga 901 aggtcatccc cgtggtgaac agcttctatg ccgccacatt ccTCCATCTC GCACATGTCT 961 GGAGGACACA GCGGAAGACC ATCTCAGACT CGGGCTTTGT CCTCAAAGGT GTGCTCTTTC 1021 TTCTGGGGAG GCCTAGGCTG AATGCACAGT GTCCCAGGTC CAGAGAGCCC AAGGTGGTTG 1081 CTAGACTGGT TTTGGCTGCA GTTCTTCCCC ATCCACACTT TCTCAAATTC CAGCTTACCA 1141 AAATCTCCAT CACCCACCCC CTGGAGTCTG CTAGTTCTCC TTTCTCTGCC CTGACTGTTG 1201 CCCTTTTCTG GTCTTATACT TATGACAAGC ATATATTCTG CCCAACTTTC TTGTACAAAG 1261 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 1321 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 1381 ACGAAACTAA TTAAAACTGA CCGCAATCAC GCGTTAAGTC gacaatcaac ctctggatta 1441 caaaatttgt gaaagatt