Construct: ORF TRCN0000472878

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009491.1_s317c1
Derived from:
ccsbBroadEn_14145
DNA Barcode:
GATCTGCCTGAATCTACATGATTT
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
ANKMY1 (51281)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000472878
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001354026.1 66.4% 54.1% 0_1ins267;613_614insC;876_877ins174
2 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_017844.4 61% 40.9% (many diffs)
3 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001282780.2 60.8% 40.8% (many diffs)
4 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001308375.2 51.9% 34.8% (many diffs)
5 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004285.2 48.5% 32.6% (many diffs)
6 human 51281 ANKMY1 ankyrin repeat and MYND dom... NR_148697.2 46.5% (many diffs)
7 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_024452955.1 43.3% 27.5% (many diffs)
8 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001282771.3 42.5% 28.5% (many diffs)
9 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001354023.2 42.5% 28.5% (many diffs)
10 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001282781.2 42.4% 35% (many diffs)
11 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004289.1 39% 23.1% (many diffs)
12 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004288.1 38.7% 23% (many diffs)
13 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004275.2 38.7% 26% (many diffs)
14 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004276.1 38.7% 26% (many diffs)
15 human 51281 ANKMY1 ankyrin repeat and MYND dom... NR_148696.2 38.7% (many diffs)
16 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004287.1 38.6% 22.9% (many diffs)
17 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004290.1 36.1% 15% (many diffs)
18 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_024452952.1 35.7% 22.3% (many diffs)
19 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001354024.2 35.5% 21% (many diffs)
20 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_024452954.1 34.5% 21.9% (many diffs)
21 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_016552.5 33.9% 20.1% (many diffs)
22 human 51281 ANKMY1 ankyrin repeat and MYND dom... NM_001354025.2 33% 14.1% (many diffs)
23 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_024452958.1 33% 14.1% (many diffs)
24 human 51281 ANKMY1 ankyrin repeat and MYND dom... NR_148698.1 31.6% (many diffs)
25 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004281.1 30.9% 18.3% (many diffs)
26 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_017004282.1 30.9% 18.3% (many diffs)
27 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_024452953.1 30.9% 18.3% (many diffs)
28 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_024452956.1 27.5% 11.8% (many diffs)
29 human 51281 ANKMY1 ankyrin repeat and MYND dom... XM_024452957.1 27.5% 11.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
990
ORF length:
924
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga angggcccan gcctccctta gcttagagga cgaagtctct ggggctggca
121gccgccaacg cccgctagag gggaagggcg gcgagacccc tgctgccgag gagccggggt
181ccctgaagaa ctacgctgtc ttcgccacaa gggatgtttc agcagcccct gagaaggaag
241aggaggaagc tgagggcccg ctgagggcgc aggacctgag ggagtcctac atccagctcg
301tccagggtgt gcaggagtgg caggatggtt gcatgtacca gggggagttt gggttgaaca
361tgaagcttgg atatggcaaa ttctcttggc ccacaggcga gtcataccat gggcagtttt
421accgggacca ctgccatggc ctgggtacct acatgtggcc agatggctcc agtttcacgg
481gcacatttta cctcagccac cgagaaggct acggcaccat gtacatgaag acacggcttt
541tccagactca ctgccacaac gacattgtca accttctcct ggactgtggg gccgacgtga
601acaagtgctc agatgagggt ctcacggcac tcagcatgtg tttcctcctc cactaccccg
661cccagtcctt caagcccaat gttgctgaac ggaccatacc tgagccccag gaacctccaa
721aattcccagt tgttccaatc ctttcatcat catttatgga cacaaacctg gagtctctgt
781actatgaggt gaacgtgcct tcccagggta gctatgagct gaggccaccg ccagcaccac
841tgctcctgcc acgcgtctca ggcagccacg agggcggcca cttccaggac aCCGGGCAGT
901GTGGGGGGTC CATAGACCAC AGGAGCAGCT CTCTGAAGGG GGACTCCCCC GTTGGTGAAG
961GGCAGCCTTG GCCATGTGGA AAGCGGGCTT GAGGACGTGT TGGGAAACAC AGACCGGGGC
1021AGTCTGTGCA GTGCTGAGAC GAAATTTGAG TCCAACGTGT GTGTGTGCGA CTTCTCCATC
1081GAGCTCTCGC AGGCCATGCT GGAGAGAAGC GCCCAGTCCC ACAGCTTGCT GAAGATGGCC
1141TCGCCCTCAC CGTGCACCAG CAGCTTCGAC AAAGGGACCA TGCGGAGGAT GGCGCTGTCC
1201ATGATCGAGC GGAGGAAGCG CTGGCGGACC ATCAAGCTGC TGCTGCGCCG GGGCGCGGAC
1261CCCAACCTGT GCTGCGTGCC CATGCAGGTC CTGTTCCTTG CTGTGAAGGC CGGGGACGTG
1321GATGGGGTGA GGCTGCTGCT GGAGCACGGG GCGAGGACCG ACATCTGCTT TCCGCCGCAG
1381TGTTGCCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC
1441CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT
1501TGGCTTTATA TATCTTGTGG AAAGGACGAG ATCTGCCTGA ATCTACATGA TTTACGCGTT
1561AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag att

Download FASTA (ORF) (Full)