Construct: ORF TRCN0000472890
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016883.1_s317c1
- Derived from:
- ccsbBroadEn_04958
- DNA Barcode:
- AAGAAGTGAAGCACGCGCTTGAAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- R3HDML (140902)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000472890
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 140902 | R3HDML | R3H domain containing like | NM_178491.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 828
- ORF length:
- 759
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcccctgctg cccagcaccg tgggcctggc aggcctgctc ttctgggctg 121 gccaggcagt gaacgccttg ataatgccta atgctacccc agccccggcc cagcccgaga 181 gcacggctat gcggctcctg agtggcctgg aggtgcccag gtaccgccgg aagcgccaca 241 tctctgtgag agacatgaat gccttactgg attatcacaa ccacatccgg gccagtgtgt 301 acccacctgc cgccaacatg gaatacatgg tctgggacaa gcggctggcc agggctgccg 361 aagcctgggc cacccagtgc atctgggcac atgggccttc acagctgatg agatacgtgg 421 gccagaacct ctccatccat tctggccagt accggtccgt agtggatctc atgaagtcct 481 ggtctgagga gaagtggcat tacttgtttc cggccccaag ggactgtaac ccacactgcc 541 cctggcgctg cgatggcccc acctgctccc attataccca gatggtgtgg gcatcctcca 601 atcggctggg ctgtgccatc cacacctgta gtagcatcag tgtctggggc aacacctggc 661 atcgggcggc atacctggtc tgcaacTATG CCATTAAGGG CAACTGGATT GGCGAGTCCC 721 CGTACAAGAT GGGAAAGCCG TGCTCCTCCT GTCCCCCCAG TTATCAAGGC AGCTGCAATA 781 GCAACATGTG CTTCAAGGGG CTGAAATCCA ACAAGTTCAC GTGGTTCTTG CCAACTTTCT 841 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 901 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 961 GTGGAAAGGA CGAAAGAAGT GAAGCACGCG CTTGAATACG CGTTAAGTCg acaatcaacc 1021 tctggattac aaaatttgtg aaagatt